SMTL ID : 2uxw.1

Crystal structure of human very long chain acyl-CoA dehydrogenase (ACADVL)

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.45 Å

Oligo State

homo-dimer

Ligands

4 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.1: 4 residues within 4Å: Chain A: Q.514 Chain B: F.321, F.328 Ligands: FAD.3 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:Q.514 Water bridges: A:N.512 EDO.2: 5 residues within 4Å: Chain A: G.206, L.207, D.209, R.238, H.245 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:D.209 EDO.5: 4 residues within 4Å: Chain A: F.321, F.328 Chain B: Q.514 Ligands: FAD.7 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:Q.514 Water bridges: B:N.512 EDO.6: 5 residues within 4Å: Chain B: G.206, L.207, D.209, R.238, H.245 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:D.209

2 x FAD: FLAVIN-ADENINE DINUCLEOTIDE(Non-covalent)

FAD.3: 30 residues within 4Å: Chain A: F.166, L.168, T.169, G.174, S.175, W.201, I.202, S.203, K.251, T.259, I.409, I.412, F.413, T.416, D.418, I.419, L.422, Q.514 Chain B: R.318, Q.320, F.321, I.325, F.328, I.331, Q.387, I.388, G.390, G.391 Ligands: EDO.1, TH3.4 26 PLIP interactions: 19 interactions with chain A, 7 interactions with chain B Hydrophobic interactions: A:W.201, A:K.251, A:I.409 Hydrogen bonds: A:F.166, A:L.168, A:T.169, A:T.169, A:S.175, A:S.175, A:S.203, A:E.414, A:T.416, A:T.416, A:Q.514, B:Q.320, B:Q.387, B:G.391 Water bridges: A:T.169, A:S.173, A:G.174, A:G.415, B:R.318, B:M.392 pi-Stacking: A:F.413 Salt bridges: B:R.318, B:R.318 FAD.7: 30 residues within 4Å: Chain A: R.318, Q.320, F.321, I.325, F.328, I.331, Q.387, I.388, G.390, G.391 Chain B: F.166, L.168, T.169, G.174, S.175, W.201, I.202, S.203, K.251, T.259, I.409, I.412, F.413, T.416, D.418, I.419, L.422, Q.514 Ligands: EDO.5, TH3.8 26 PLIP interactions: 7 interactions with chain A, 19 interactions with chain B Hydrogen bonds: A:Q.320, A:Q.387, A:G.391, B:F.166, B:L.168, B:T.169, B:T.169, B:S.175, B:S.175, B:S.203, B:E.414, B:T.416, B:D.418, B:Q.514 Water bridges: A:R.318, A:M.392, B:T.169, B:S.173, B:G.174, B:G.415 Salt bridges: A:R.318, A:R.318 Hydrophobic interactions: B:W.201, B:K.251, B:I.409 pi-Stacking: B:F.413

2 x TH3: TRANS DELTA2 PALMITENOYL-COENZYMEA(Non-covalent)

TH3.4: 19 residues within 4Å: Chain A: L.96, Y.112, V.116, G.127, I.128, L.130, G.131, A.132, S.135, I.136, F.166, G.174, S.175, L.289, G.295, F.413, E.414, G.415 Ligands: FAD.3 14 PLIP interactions: 14 interactions with chain A Hydrophobic interactions: A:L.96, A:V.116, A:V.116, A:L.130, A:L.130, A:I.136, A:F.413, A:F.413, A:E.414 Hydrogen bonds: A:E.414 Water bridges: A:G.174, A:R.293, A:G.415, A:G.415 TH3.8: 19 residues within 4Å: Chain B: L.96, Y.112, V.116, G.127, I.128, L.130, G.131, A.132, S.135, I.136, F.166, G.174, S.175, L.289, G.295, F.413, E.414, G.415 Ligands: FAD.7 14 PLIP interactions: 14 interactions with chain B Hydrophobic interactions: B:L.96, B:V.116, B:V.116, B:L.130, B:L.130, B:I.136, B:F.413, B:F.413, B:E.414 Hydrogen bonds: B:E.414 Water bridges: B:G.174, B:R.293, B:G.415, B:G.415

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Pike, A.C.W. et al., Crystal Structure of Human Very Long Chain Acyl- Coa Dehydrogenase (Acadvl). To be Published

Release Date

2007-05-01

Peptides

VERY-LONG-CHAIN SPECIFIC ACYL-COA DEHYDROGENASE: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

VERY-LONG-CHAIN SPECIFIC ACYL-COA DEHYDROGENASE