SMTL ID : 2uxx.1

Human LSD1 Histone Demethylase-CoREST in complex with an FAD- tranylcypromine adduct

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.74 Å

Oligo State

hetero-1-1-mer

Ligands

1 x FAJ: FAD-trans-2-Phenylcyclopropylamine Adduct(Non-covalent)

FAJ.1: 39 residues within 4Å: Chain A: I.114, G.115, S.116, G.117, V.118, S.119, L.137, E.138, A.139, R.140, G.144, G.145, R.146, V.147, L.159, G.160, A.161, M.162, V.163, T.165, T.418, A.419, V.420, T.454, L.455, P.456, V.467, L.489, K.491, W.581, W.586, S.590, Y.591, G.630, E.631, A.639, T.640, V.641, A.644 30 PLIP interactions: 30 interactions with chain A Hydrophobic interactions: A:R.146, A:T.165, A:L.489, A:W.581, A:Y.591, A:Y.591, A:T.640 Hydrogen bonds: A:S.116, A:G.117, A:S.119, A:S.119, A:S.119, A:A.139, A:R.140, A:R.146, A:A.161, A:M.162, A:V.163, A:V.163, A:V.420, A:V.420, A:K.491, A:E.631, A:V.641 Water bridges: A:V.118, A:V.118, A:G.120, A:H.632 Salt bridges: A:R.146, A:R.146

2 x GOL: GLYCEROL(Non-functional Binders)

GOL.2: 6 residues within 4Å: Chain A: G.239, I.246, R.356, L.374, T.515, R.518 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:R.356, A:R.356, A:R.518, A:R.518 GOL.3: 3 residues within 4Å: Chain A: Q.188, N.365, L.523 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:N.365

1 x CL: CHLORIDE ION(Non-functional Binders)

CL.4: 0 residues within 4Å: (No contacts) Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Yang, M. et al., Structural Basis for the Inhibition of the Lsd1 Histone Demethylase by the Antidepressant Trans-2-Phenylcyclopropylamine. Biochemistry (2007)

Release Date

2007-08-21

Peptides

LYSINE-SPECIFIC HISTONE DEMETHYLASE 1: A
REST COREPRESSOR 1: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

LYSINE-SPECIFIC HISTONE DEMETHYLASE 1

REST COREPRESSOR 1

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