SMTL ID : 2uyy.1

Structure of the cytokine-like nuclear factor n-pac

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.50 Å

Oligo State

homo-tetramer

Ligands

4 x K: POTASSIUM ION(Non-covalent)

K.1: 4 residues within 4Å: Chain A: G.160, Q.181, A.182, G.184 4 PLIP interactions: 3 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:G.160, A:Q.181, A:G.184, H2O.2 K.3: 4 residues within 4Å: Chain B: G.160, Q.181, A.182, G.184 4 PLIP interactions: 3 interactions with chain B, 1 Ligand-Water interactions Metal complexes: B:G.160, B:Q.181, B:G.184, H2O.5 K.4: 4 residues within 4Å: Chain C: G.160, Q.181, A.182, G.184 4 PLIP interactions: 3 interactions with chain C, 1 Ligand-Water interactions Metal complexes: C:G.160, C:Q.181, C:G.184, H2O.9 K.5: 4 residues within 4Å: Chain D: G.160, Q.181, A.182, G.184 3 PLIP interactions: 2 interactions with chain D, 1 Ligand-Water interactions Metal complexes: D:G.160, D:Q.181, H2O.13

2 x NA7: [(2R,3R,4R,5R)-5-(6-AMINO-9H-PURIN-9-YL)-3-HYDROXY-4-(PHOSPHONOOXY)TETRAHYDROFURAN-2-YL]METHYL [(2R,3S,4S)-3,4-DIHYDROXYTETRAHYDROFURAN-2-YL]METHYL DIHYDROGEN DIPHOSPHATE(Non-covalent)

NA7.2: 22 residues within 4Å: Chain A: L.38, G.39, L.40, M.41, G.42, W.59, N.60, R.61, T.62, K.65, C.93, V.94, S.95, A.99, D.102, S.124, T.125, F.261, Y.262, Y.265, K.268, D.269 24 PLIP interactions: 24 interactions with chain A Hydrogen bonds: A:L.38, A:L.40, A:M.41, A:G.42, A:N.60, A:N.60, A:R.61, A:R.61, A:T.62, A:T.62, A:V.94, A:S.95, A:D.102, A:D.102, A:T.125, A:T.125, A:Y.265, A:K.268, A:K.268 Water bridges: A:R.61, A:R.61 Salt bridges: A:R.61 pi-Cation interactions: A:R.61, A:R.61 NA7.6: 20 residues within 4Å: Chain D: L.38, G.39, L.40, M.41, W.59, N.60, R.61, T.62, C.93, V.94, S.95, A.99, D.102, S.124, T.125, F.261, Y.262, Y.265, K.268, D.269 19 PLIP interactions: 19 interactions with chain D Hydrogen bonds: D:L.38, D:L.38, D:L.40, D:M.41, D:G.42, D:N.60, D:N.60, D:R.61, D:T.62, D:V.94, D:D.102, D:T.125, D:K.268, D:K.268 Water bridges: D:R.61, D:R.61, D:R.61 Salt bridges: D:R.61 pi-Cation interactions: D:R.61

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Tickle, J. et al., The Structure of the Cytokine-Like Nuclear Factor N-Pac. To be Published

Release Date

2007-07-03

Peptides

N-PAC PROTEIN: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

N-PAC PROTEIN