SMTL ID : 2v0s.1

crystal structure of a hairpin exchange variant (LR1) of the targeting LINE-1 retrotransposon endonuclease

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.80 Å

Oligo State

monomer

Ligands

1 x MN: MANGANESE (II) ION(Non-covalent)

MN.1: 2 residues within 4Å: Chain A: E.43 Ligands: GOL.4 3 PLIP interactions: 1 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:E.43, H2O.7, H2O.7

2 x SO4: SULFATE ION(Non-functional Binders)

SO4.2: 3 residues within 4Å: Chain A: S.20, A.21, I.22 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:A.21, A:I.22 SO4.3: 6 residues within 4Å: Chain A: N.16, G.17, L.18, N.19, K.23, H.45 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:L.18, A:N.19 Salt bridges: A:K.23, A:H.45

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.4: 9 residues within 4Å: Chain A: E.43, Y.115, N.118, D.145, N.147, I.202, D.227, H.228 Ligands: MN.1 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:Y.115, A:N.118, A:D.145, A:N.147 Water bridges: A:N.14

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Repanas, K. et al., Determinants for DNA Target Structure Selectivity of the Human Line-1 Retrotransposon Endonuclease. Nucleic Acids Res. (2007)

Release Date

2007-07-17

Peptides

LR1: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

LR1