- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.59 Å
- Oligo State
- homo-12-mer
- Ligands
- 10 x FMN: FLAVIN MONONUCLEOTIDE(Non-covalent)
- 12 x COA: COENZYME A(Non-covalent)
COA.2: 21 residues within 4Å:- Chain A: R.27, T.31, L.32, R.33, H.34, F.63, R.64, L.65, E.66
- Chain E: K.5, V.7, L.9, R.27, A.28, L.32, F.63, L.65
- Chain I: K.5, L.65
- Ligands: COA.13, COA.21
12 PLIP interactions:3 interactions with chain E, 9 interactions with chain A- Hydrophobic interactions: E:L.32, E:L.65
- Hydrogen bonds: E:K.5, A:T.31, A:T.31, A:R.33, A:R.33, A:R.33, A:R.64, A:E.66
- Salt bridges: A:R.27
- pi-Cation interactions: A:R.33
COA.4: 21 residues within 4Å:- Chain B: R.27, T.31, L.32, R.33, H.34, F.63, R.64, L.65, E.66
- Chain F: K.5, V.7, L.9, R.27, A.28, L.32, F.63, L.65
- Chain J: K.5, L.65
- Ligands: COA.15, COA.23
11 PLIP interactions:8 interactions with chain B, 3 interactions with chain F- Hydrogen bonds: B:T.31, B:R.33, B:R.33, B:R.33, B:R.64, B:E.66, F:K.5
- Salt bridges: B:R.27
- pi-Cation interactions: B:R.33
- Hydrophobic interactions: F:L.32, F:L.65
COA.7: 21 residues within 4Å:- Chain C: R.27, T.31, L.32, R.33, H.34, F.63, R.64, L.65, E.66
- Chain G: K.5, V.7, R.27, A.28, T.31, L.32, F.63, L.65
- Chain K: K.5, L.65
- Ligands: COA.18, COA.25
12 PLIP interactions:8 interactions with chain C, 4 interactions with chain G- Hydrogen bonds: C:T.31, C:R.33, C:R.33, C:R.33, C:R.64, C:E.66, G:K.5
- Salt bridges: C:R.27
- pi-Cation interactions: C:R.33
- Hydrophobic interactions: G:L.32, G:F.63, G:L.65
COA.10: 21 residues within 4Å:- Chain D: R.27, T.31, L.32, R.33, H.34, F.63, R.64, L.65, E.66
- Chain H: K.5, V.7, L.9, R.27, A.28, L.32, F.63, L.65
- Chain L: K.5, L.65
- Ligands: COA.19, COA.27
13 PLIP interactions:9 interactions with chain D, 4 interactions with chain H- Hydrogen bonds: D:T.31, D:T.31, D:R.33, D:R.33, D:R.33, D:R.64, D:E.66, H:K.5
- Salt bridges: D:R.27
- pi-Cation interactions: D:R.33
- Hydrophobic interactions: H:L.32, H:F.63, H:L.65
COA.13: 22 residues within 4Å:- Chain A: K.5, L.65
- Chain E: R.27, T.31, L.32, R.33, H.34, F.63, R.64, L.65, E.66
- Chain I: K.5, V.7, L.9, R.27, A.28, T.31, L.32, F.63, L.65
- Ligands: COA.2, COA.21
11 PLIP interactions:8 interactions with chain E, 3 interactions with chain I- Hydrogen bonds: E:T.31, E:R.33, E:R.33, E:R.33, E:R.64, E:E.66, I:K.5
- Salt bridges: E:R.27
- pi-Cation interactions: E:R.33
- Hydrophobic interactions: I:L.32, I:L.65
COA.15: 21 residues within 4Å:- Chain B: K.5, L.65
- Chain F: R.27, T.31, L.32, R.33, H.34, F.63, R.64, L.65, E.66
- Chain J: K.5, V.7, R.27, A.28, T.31, L.32, F.63, L.65
- Ligands: COA.4, COA.23
12 PLIP interactions:9 interactions with chain F, 3 interactions with chain J- Hydrogen bonds: F:T.31, F:T.31, F:R.33, F:R.33, F:R.33, F:R.64, F:E.66, J:K.5
- Salt bridges: F:R.27
- pi-Cation interactions: F:R.33
- Hydrophobic interactions: J:L.32, J:L.65
COA.18: 21 residues within 4Å:- Chain C: K.5, L.65
- Chain G: R.27, T.31, L.32, R.33, H.34, F.63, R.64, L.65, E.66
- Chain K: K.5, V.7, L.9, R.27, A.28, L.32, F.63, L.65
- Ligands: COA.7, COA.25
12 PLIP interactions:9 interactions with chain G, 3 interactions with chain K- Hydrogen bonds: G:T.31, G:T.31, G:R.33, G:R.33, G:R.33, G:R.64, G:E.66, K:K.5
- Salt bridges: G:R.27
- pi-Cation interactions: G:R.33
- Hydrophobic interactions: K:L.32, K:L.65
COA.19: 22 residues within 4Å:- Chain D: K.5, L.65
- Chain H: R.27, T.31, L.32, R.33, H.34, F.63, R.64, L.65, E.66
- Chain L: K.5, V.7, L.9, R.27, A.28, T.31, L.32, F.63, L.65
- Ligands: COA.10, COA.27
11 PLIP interactions:3 interactions with chain L, 8 interactions with chain H- Hydrophobic interactions: L:L.32, L:L.65
- Hydrogen bonds: L:K.5, H:T.31, H:R.33, H:R.33, H:R.33, H:R.64, H:E.66
- Salt bridges: H:R.27
- pi-Cation interactions: H:R.33
COA.21: 21 residues within 4Å:- Chain A: K.5, V.7, L.9, R.27, A.28, L.32, F.63, L.65
- Chain E: K.5, L.65
- Chain I: R.27, T.31, L.32, R.33, H.34, F.63, R.64, L.65, E.66
- Ligands: COA.2, COA.13
11 PLIP interactions:3 interactions with chain A, 8 interactions with chain I- Hydrophobic interactions: A:L.32, A:L.65
- Hydrogen bonds: A:K.5, I:T.31, I:R.33, I:R.33, I:R.33, I:R.64, I:E.66
- Salt bridges: I:R.27
- pi-Cation interactions: I:R.33
COA.23: 22 residues within 4Å:- Chain B: K.5, V.7, L.9, R.27, A.28, T.31, L.32, F.63, L.65
- Chain F: K.5, L.65
- Chain J: R.27, T.31, L.32, R.33, H.34, F.63, R.64, L.65, E.66
- Ligands: COA.4, COA.15
13 PLIP interactions:4 interactions with chain B, 9 interactions with chain J- Hydrophobic interactions: B:L.32, B:F.63, B:L.65
- Hydrogen bonds: B:K.5, J:T.31, J:T.31, J:R.33, J:R.33, J:R.33, J:R.64, J:E.66
- Salt bridges: J:R.27
- pi-Cation interactions: J:R.33
COA.25: 21 residues within 4Å:- Chain C: K.5, V.7, L.9, R.27, A.28, T.31, L.32, L.65
- Chain G: K.5, L.65
- Chain K: R.27, T.31, L.32, R.33, H.34, F.63, R.64, L.65, E.66
- Ligands: COA.7, COA.18
12 PLIP interactions:3 interactions with chain C, 9 interactions with chain K- Hydrophobic interactions: C:L.32, C:L.65
- Hydrogen bonds: C:K.5, K:T.31, K:R.33, K:R.33, K:R.33, K:R.64, K:E.66, K:E.66
- Salt bridges: K:R.27
- pi-Cation interactions: K:R.33
COA.27: 21 residues within 4Å:- Chain D: K.5, V.7, R.27, A.28, T.31, L.32, F.63, L.65
- Chain H: K.5, L.65
- Chain L: R.27, T.31, L.32, R.33, H.34, F.63, R.64, L.65, E.66
- Ligands: COA.10, COA.19
11 PLIP interactions:3 interactions with chain D, 8 interactions with chain L- Hydrophobic interactions: D:L.32, D:L.65
- Hydrogen bonds: D:K.5, L:T.31, L:R.33, L:R.33, L:R.33, L:R.64, L:E.66
- Salt bridges: L:R.27
- pi-Cation interactions: L:R.33
- 5 x CL: CHLORIDE ION(Non-functional Binders)
CL.3: 3 residues within 4Å:- Chain A: K.5
- Chain E: K.5
- Chain I: K.5
Ligand excluded by PLIPCL.5: 3 residues within 4Å:- Chain B: K.5
- Chain F: K.5
- Chain J: K.5
Ligand excluded by PLIPCL.8: 3 residues within 4Å:- Chain C: K.5
- Chain G: K.5
- Chain K: K.5
Ligand excluded by PLIPCL.11: 3 residues within 4Å:- Chain D: K.5
- Chain H: K.5
- Chain L: K.5
Ligand excluded by PLIPCL.16: 2 residues within 4Å:- Chain F: H.34, R.64
Ligand excluded by PLIP- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Meissner, B. et al., The Dodecin from Thermus Thermophilus, a Bifunctional Cofactor Storage Protein. J.Biol.Chem. (2007)
- Release Date
- 2007-09-11
- Peptides
- DODECIN: ABCDEFGHIJKL
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
CD
DE
EF
FG
GH
HI
IJ
JK
KL
L
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.59 Å
- Oligo State
- homo-12-mer
- Ligands
- 10 x FMN: FLAVIN MONONUCLEOTIDE(Non-covalent)
- 12 x COA: COENZYME A(Non-covalent)
- 5 x CL: CHLORIDE ION(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Meissner, B. et al., The Dodecin from Thermus Thermophilus, a Bifunctional Cofactor Storage Protein. J.Biol.Chem. (2007)
- Release Date
- 2007-09-11
- Peptides
- DODECIN: ABCDEFGHIJKL
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
CD
DE
EF
FG
GH
HI
IJ
JK
KL
L