SMTL ID : 2v1o.1

Crystal structure of N-terminal domain of acyl-CoA thioesterase 7

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.78 Å

Oligo State

homo-hexamer

Ligands

6 x COA: COENZYME A(Non-covalent)

COA.1: 25 residues within 4Å: Chain A: A.49, L.50, A.51, R.52, S.78, K.79, H.80, S.81, W.107, V.109, L.111, V.119, Y.140, Q.143, K.144, R.147 Chain D: V.17, H.18, G.19, I.22, D.57, F.58, L.59, S.60, P.61 24 PLIP interactions: 21 interactions with chain A, 3 interactions with chain D Hydrophobic interactions: A:A.49, A:A.51, A:V.109, A:L.111 Hydrogen bonds: A:L.50, A:S.78, A:K.79, A:H.80, A:S.81, A:Y.140, A:Q.143, A:K.144, A:R.147, A:R.147, D:D.57, D:F.58 Water bridges: A:S.81, A:K.144, A:K.144, D:G.19 Salt bridges: A:H.80, A:K.144 pi-Cation interactions: A:R.147, A:R.147 COA.2: 25 residues within 4Å: Chain B: A.49, L.50, A.51, R.52, S.78, K.79, H.80, S.81, W.107, V.109, L.111, V.119, Y.140, Q.143, K.144, R.147 Chain C: V.17, H.18, G.19, I.22, D.57, F.58, L.59, S.60, P.61 22 PLIP interactions: 3 interactions with chain C, 19 interactions with chain B Hydrogen bonds: C:D.57, C:F.58, B:L.50, B:S.78, B:S.78, B:K.79, B:H.80, B:S.81, B:Q.143, B:K.144, B:R.147, B:R.147 Water bridges: C:G.19, B:H.80, B:K.144 Hydrophobic interactions: B:A.49, B:A.51, B:L.111 Salt bridges: B:H.80, B:K.144 pi-Cation interactions: B:R.147, B:R.147 COA.3: 25 residues within 4Å: Chain B: V.17, H.18, G.19, I.22, D.57, F.58, L.59, S.60, P.61 Chain C: A.49, L.50, A.51, R.52, S.78, K.79, H.80, S.81, W.107, V.109, L.111, V.119, Y.140, Q.143, K.144, R.147 21 PLIP interactions: 4 interactions with chain B, 17 interactions with chain C Hydrogen bonds: B:D.57, B:D.57, B:F.58, C:L.50, C:S.78, C:K.79, C:H.80, C:S.81, C:Q.143, C:K.144, C:R.147 Water bridges: B:G.19, C:S.81, C:K.144, C:R.147 Hydrophobic interactions: C:A.49, C:L.111 Salt bridges: C:H.80, C:K.144 pi-Cation interactions: C:R.147, C:R.147 COA.4: 25 residues within 4Å: Chain A: V.17, H.18, G.19, I.22, D.57, F.58, L.59, S.60, P.61 Chain D: A.49, L.50, A.51, R.52, S.78, K.79, H.80, S.81, W.107, V.109, L.111, V.119, Y.140, Q.143, K.144, R.147 21 PLIP interactions: 18 interactions with chain D, 3 interactions with chain A Hydrophobic interactions: D:A.49, D:A.51, D:L.111 Hydrogen bonds: D:L.50, D:L.50, D:S.78, D:K.79, D:H.80, D:S.81, D:Y.140, D:Q.143, D:R.147, D:R.147, A:D.57, A:F.58 Water bridges: D:H.80, A:G.19 Salt bridges: D:H.80, D:K.144 pi-Cation interactions: D:R.147, D:R.147 COA.5: 25 residues within 4Å: Chain E: A.49, L.50, A.51, R.52, S.78, K.79, H.80, S.81, W.107, V.109, L.111, V.119, Y.140, Q.143, K.144, R.147 Chain F: V.17, H.18, G.19, I.22, D.57, F.58, L.59, S.60, P.61 23 PLIP interactions: 19 interactions with chain E, 4 interactions with chain F Hydrophobic interactions: E:A.49, E:V.109, E:L.111 Hydrogen bonds: E:L.50, E:S.78, E:S.78, E:K.79, E:H.80, E:S.81, E:R.147, E:R.147, F:D.57, F:D.57, F:F.58 Water bridges: E:S.81, E:Q.143, E:K.144, E:K.144, F:G.19 Salt bridges: E:H.80, E:K.144 pi-Cation interactions: E:R.147, E:R.147 COA.6: 25 residues within 4Å: Chain E: V.17, H.18, G.19, I.22, D.57, F.58, L.59, S.60, P.61 Chain F: A.49, L.50, A.51, R.52, S.78, K.79, H.80, S.81, W.107, V.109, L.111, V.119, Y.140, Q.143, K.144, R.147 19 PLIP interactions: 16 interactions with chain F, 3 interactions with chain E Hydrophobic interactions: F:A.49, F:A.51, F:L.111 Hydrogen bonds: F:L.50, F:S.78, F:K.79, F:H.80, F:S.81, F:Q.143, F:K.144, F:R.147, F:R.147, E:D.57, E:F.58 Salt bridges: F:H.80, F:K.144 pi-Cation interactions: F:R.147, F:R.147 Water bridges: E:G.19

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Forwood, J.K. et al., Structural Basis for Recruitment of Tandem Hotdog Domains in Acyl-Coa Thioesterase 7 and its Role in Inflammation. Proc.Natl.Acad.Sci.USA (2007)

Release Date

2007-06-26

Peptides

CYTOSOLIC ACYL COENZYME A THIOESTER HYDROLASE: ABCDEF

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

E
E

F
F

CYTOSOLIC ACYL COENZYME A THIOESTER HYDROLASE