SMTL ID : 2v26.1

Myosin VI (MD) pre-powerstroke state (Mg.ADP.VO4)

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.75 Å

Oligo State

monomer

Ligands

1 x ADP: ADENOSINE-5'-DIPHOSPHATE(Non-covalent)

ADP.1: 21 residues within 4Å: Chain A: I.82, N.94, P.95, Y.96, F.97, D.98, Y.103, E.148, S.149, G.150, A.151, G.152, K.153, T.154, E.155, F.159, N.196, N.198, L.306 Ligands: VO4.2, MG.12 19 PLIP interactions: 19 interactions with chain A Hydrogen bonds: A:N.94, A:Y.103, A:G.150, A:A.151, A:G.152, A:K.153, A:T.154, A:E.155, A:N.196, A:N.198 Water bridges: A:E.155, A:N.156, A:N.198, A:N.198, A:S.200, A:S.200, A:S.200, A:D.304 Salt bridges: A:K.153

1 x VO4: VANADATE ION(Non-covalent)

VO4.2: 12 residues within 4Å: Chain A: S.149, G.150, K.153, T.154, N.196, S.199, S.200, R.201, A.454, G.455 Ligands: ADP.1, MG.12 10 PLIP interactions: 10 interactions with chain A Hydrogen bonds: A:G.150, A:K.153, A:N.196, A:S.199, A:S.200, A:R.201, A:G.455 Water bridges: A:T.193, A:S.200, A:G.455

7 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.3: 4 residues within 4Å: Chain A: H.223, Y.224, L.225, Q.646 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:H.223, A:L.225 EDO.4: 8 residues within 4Å: Chain A: F.202, G.203, I.453, A.454, I.469, C.472, N.473 Ligands: EDO.9 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:F.202, A:A.454, A:I.469, A:N.473 EDO.5: 6 residues within 4Å: Chain A: E.148, R.195, E.457, Y.458, K.666, L.669 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:Y.458, A:K.666 Water bridges: A:E.148 EDO.6: 7 residues within 4Å: Chain A: D.80, R.81, I.82, Y.83, I.99, I.102, P.121 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:D.80, A:I.82, A:Y.83, A:P.121 Water bridges: A:R.76 EDO.7: 4 residues within 4Å: Chain A: W.4, V.14, H.71, K.74 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:H.71, A:K.74 EDO.8: 8 residues within 4Å: Chain A: Y.458, F.459, N.462, L.561, H.564, A.581, V.582, C.583 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:N.462, A:C.583, A:C.583 Water bridges: A:A.581 EDO.9: 9 residues within 4Å: Chain A: R.201, F.202, L.225, L.226, E.227, A.454, I.469, F.643 Ligands: EDO.4 No protein-ligand interaction detected (PLIP)

2 x SO4: SULFATE ION(Non-functional Binders)

SO4.10: 2 residues within 4Å: Chain A: S.252, E.253 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:E.253 Water bridges: A:S.252, A:D.254 SO4.11: 2 residues within 4Å: Chain A: R.517, K.644 2 PLIP interactions: 2 interactions with chain A Salt bridges: A:R.517, A:K.644

1 x MG: MAGNESIUM ION(Non-covalent)

MG.12: 4 residues within 4Å: Chain A: T.154, S.200 Ligands: ADP.1, VO4.2 4 PLIP interactions: 2 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:T.154, A:S.200, H2O.13, H2O.21

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Menetrey, J. et al., The Structural Basis for the Large Powerstroke of Myosin Vi. Cell(Cambridge,Mass.) (2007)

Release Date

2007-11-20

Peptides

MYOSIN VI: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

MYOSIN VI