SMTL ID : 2v2v.1 (1 other biounit)

IspE in complex with ligand

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.40 Å

Oligo State

monomer

Ligands

2 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 9 residues within 4Å: Chain A: P.92, G.93, A.94, G.95, L.96, G.97, T.174, G.242 Ligands: V12.9 14 PLIP interactions: 14 interactions with chain A Hydrogen bonds: A:G.93, A:A.94, A:G.95, A:L.96, A:G.97, A:T.174, A:G.242 Water bridges: A:G.97, A:G.98, A:G.98, A:G.98, A:G.99, A:G.99, A:S.241 SO4.2: 4 residues within 4Å: Chain A: R.216, Y.226, R.227, E.230 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:Y.226 Salt bridges: A:R.216, A:R.227

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.3: 8 residues within 4Å: Chain A: I.58, N.63, L.64, I.86, K.88, P.92, G.99, N.102 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:N.63, A:N.63, A:L.64, A:K.88, A:K.88 Water bridges: A:G.99

5 x BR: BROMIDE ION(Non-covalent)

BR.4: 4 residues within 4Å: Chain A: V.170, Y.219, P.220, E.221 Ligand excluded by PLIP BR.5: 4 residues within 4Å: Chain A: E.208, N.209, F.237, V.238 Ligand excluded by PLIP BR.6: 4 residues within 4Å: Chain A: R.22, L.181, R.182, E.183 Ligand excluded by PLIP BR.7: 3 residues within 4Å: Chain A: M.4, Y.44, F.85 Ligand excluded by PLIP BR.8: 2 residues within 4Å: Chain A: N.223, R.227 Ligand excluded by PLIP

1 x V12: 5'-[(1H-BENZIMIDAZOL-2-YLACETYL)AMINO]-5'-DEOXYCYTIDINE(Non-covalent)

V12.9: 9 residues within 4Å: Chain A: Y.27, H.28, K.148, S.171, S.172, S.173, T.174, Y.178 Ligands: SO4.1 6 PLIP interactions: 6 interactions with chain A Hydrophobic interactions: A:Y.27 Hydrogen bonds: A:H.28, A:H.28, A:K.148, A:T.174 pi-Stacking: A:Y.178

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Crane, C.M. et al., Synthesis and Characterization of Cytidine Derivatives that Inhibit the Kinase Ispe of the Non-Mevalonate Pathway for Isoprenoid Biosynthesis. Chemmedchem (2008)

Release Date

2007-06-19

Peptides

4-DIPHOSPHOCYTIDYL-2C-METHYL-D-ERYTHRITOL KINASE: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

4-DIPHOSPHOCYTIDYL-2C-METHYL-D-ERYTHRITOL KINASE

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