SMTL ID : 2v30.1

Human orotidine 5'-phosphate decarboxylase domain of uridine monophospate synthetase (UMPS) in complex with its product UMP.

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.00 Å

Oligo State

homo-dimer

Ligands

2 x U5P: URIDINE-5'-MONOPHOSPHATE(Non-covalent)

U5P.1: 17 residues within 4Å: Chain A: S.57, D.59, K.81, H.83, D.112, K.114, M.171, S.172, P.217, Q.230, Y.232, V.249, G.250, R.251 Chain B: D.117, I.118, T.121 17 PLIP interactions: 14 interactions with chain A, 3 interactions with chain B Hydrophobic interactions: A:P.217 Hydrogen bonds: A:S.57, A:D.59, A:K.81, A:S.172, A:S.172, A:S.172, A:Q.230, A:Y.232, A:G.250, A:R.251, B:D.117, B:T.121, B:T.121 Water bridges: A:G.218, A:G.218 Salt bridges: A:R.251 U5P.2: 17 residues within 4Å: Chain A: D.117, I.118, T.121 Chain B: S.57, D.59, K.81, H.83, D.112, K.114, M.171, S.172, P.217, Q.230, Y.232, V.249, G.250, R.251 15 PLIP interactions: 13 interactions with chain B, 2 interactions with chain A Hydrophobic interactions: B:P.217 Hydrogen bonds: B:S.57, B:K.81, B:S.172, B:S.172, B:S.172, B:Q.230, B:G.250, B:R.251, A:D.117, A:T.121 Water bridges: B:G.218, B:G.218, B:G.252 Salt bridges: B:R.251

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Moche, M. et al., The Crystal Structure of Human Orotidine 5'-Decarboxylase Domain of Human Uridine Monophosphate Synthetase (Umps). To be Published

Release Date

2007-07-24

Peptides

OROTIDINE 5'-PHOSPHATE DECARBOXYLASE: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

OROTIDINE 5'-PHOSPHATE DECARBOXYLASE

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