SMTL ID : 2v35.1

Porcine Pancreatic Elastase in complex with inhibitor JM54

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.67 Å

Oligo State

monomer

Ligands

1 x J54: (2R)-3-{[(BENZYLAMINO)CARBONYL]AMINO}-2-HYDROXYPROPANOIC ACID(Covalent)

J54.1: 13 residues within 4Å: Chain A: H.45, T.137, N.138, C.184, Q.185, G.186, D.187, S.188, S.207, V.209, S.210, R.211, C.214 13 PLIP interactions: 13 interactions with chain A Hydrophobic interactions: A:T.137 Hydrogen bonds: A:Q.185, A:G.186, A:D.187, A:S.188, A:S.207 Water bridges: A:Q.185, A:Q.185, A:Q.185, A:V.209, A:V.209, A:V.209, A:S.210

1 x NA: SODIUM ION(Non-functional Binders)

NA.2: 5 residues within 4Å: Chain A: E.59, N.61, Q.64, D.66, E.69 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:N.61, A:N.61, A:D.66, A:D.66

1 x SO4: SULFATE ION(Non-functional Binders)

SO4.3: 4 residues within 4Å: Chain A: G.118, R.225, S.227, A.228 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:G.118 Water bridges: A:G.118, A:N.170, A:A.228 Salt bridges: A:R.225

2 x GOL: GLYCEROL(Non-functional Binders)

GOL.4: 7 residues within 4Å: Chain A: V.88, A.89, T.167, F.208, V.209, S.210, R.211 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:V.209, A:R.211 Water bridges: A:R.211 GOL.5: 6 residues within 4Å: Chain A: H.28, T.29, L.134, L.141, Q.185, G.186 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:T.29 Water bridges: A:T.29, A:T.29, A:T.29

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Mulchande, J. et al., The Efficiency of C-4 Substituents in Activating the Beta-Lactam Scaffold Towards Serine Proteases and Hydroxide Ion. Org.Biomol.Chem. (2007)

Release Date

2008-06-24

Peptides

ELASTASE-1: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

ELASTASE-1

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