SMTL ID : 2v3u.1

Structure of the ligand-binding core of the ionotropic glutamate receptor-like GluRdelta2 in complex with D-serine

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.74 Å

Oligo State

monomer

Ligands

1 x DSN: D-SERINE(Non-covalent)

DSN.1: 11 residues within 4Å: Chain A: Y.58, A.85, L.86, T.87, R.92, Y.105, S.137, A.138, V.139, W.193, D.194 9 PLIP interactions: 9 interactions with chain A Hydrogen bonds: A:A.85, A:T.87, A:T.87, A:T.87, A:Y.105, A:Y.105, A:A.138, A:V.139 Salt bridges: A:R.92

1 x NA: SODIUM ION(Non-functional Binders)

NA.2: 4 residues within 4Å: Chain A: E.93, V.96, D.97, H.228 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:D.97, A:D.97, A:H.228

1 x CL: CHLORIDE ION(Non-functional Binders)

CL.3: 4 residues within 4Å: Chain A: V.10, L.11, V.52, H.56 Ligand excluded by PLIP

2 x SCN: THIOCYANATE ION(Non-functional Binders)

SCN.4: 8 residues within 4Å: Chain A: G.59, S.60, W.67, T.89, D.91, R.92, A.138, Q.141 2 PLIP interactions: 2 interactions with chain A Water bridges: A:R.220, A:R.220 SCN.5: 5 residues within 4Å: Chain A: Y.105, V.107, A.138, H.142, R.220 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Naur, P. et al., Ionotropic Glutamate-Like Receptor {Delta}2 Binds D-Serine and Glycine. Proc.Natl.Acad.Sci.USA (2007)

Release Date

2007-08-07

Peptides

GLUTAMATE RECEPTOR DELTA-2 SUBUNIT: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

GLUTAMATE RECEPTOR DELTA-2 SUBUNIT

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