SMTL ID : 2v4b.2 (1 other biounit)

Crystal Structure of Human ADAMTS-1 catalytic Domain and Cysteine- Rich Domain (apo-form)

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.00 Å

Oligo State

monomer

Ligands

1 x ZN: ZINC ION(Non-covalent)

ZN.1: 3 residues within 4Å: Chain A: H.149, H.153, H.159 3 PLIP interactions: 3 interactions with chain A Metal complexes: A:H.149, A:H.153, A:H.159

2 x CD: CADMIUM ION(Non-covalent)

CD.2: 1 residues within 4Å: Chain A: H.28 2 PLIP interactions: 1 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:H.28, H2O.1 CD.4: 3 residues within 4Å: Chain A: E.9, D.92, D.213 5 PLIP interactions: 4 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:E.9, A:D.92, A:D.92, A:D.213, H2O.1

5 x NI: NICKEL (II) ION(Non-covalent)

NI.3: 2 residues within 4Å: Chain A: E.242, D.243 3 PLIP interactions: 3 interactions with chain A Metal complexes: A:E.242, A:E.242, A:D.243 NI.5: 5 residues within 4Å: Chain A: E.9, D.92, D.99, C.210, D.213 5 PLIP interactions: 5 interactions with chain A Metal complexes: A:E.9, A:D.92, A:D.99, A:C.210, A:D.213 NI.7: 1 residues within 4Å: Chain A: H.176 2 PLIP interactions: 1 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:H.176, H2O.2 NI.8: 1 residues within 4Å: Chain A: H.207 1 PLIP interactions: 1 interactions with chain A Metal complexes: A:H.207 NI.9: 1 residues within 4Å: Chain A: H.246 2 PLIP interactions: 1 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:H.246, H2O.3

1 x MG: MAGNESIUM ION(Non-covalent)

MG.6: 3 residues within 4Å: Chain A: H.187, D.278, N.290 1 PLIP interactions: 1 interactions with chain A Metal complexes: A:D.278

2 x NA: SODIUM ION(Non-functional Binders)

NA.10: 7 residues within 4Å: Chain A: D.108, L.109, C.115, D.116, T.117, E.137 Ligands: NA.11 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:L.109, A:E.137 NA.11: 3 residues within 4Å: Chain A: D.108, C.115 Ligands: NA.10 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:D.108

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Gerhardt, S. et al., Crystal Structures of Human Adamts-1 Reveal a Conserved Catalytic Domain and a Disintegrin-Like Domain with a Fold Homologous to Cysteine-Rich Domains. J.Mol.Biol. (2007)

Release Date

2008-01-15

Peptides

ADAMTS-1: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

ADAMTS-1

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