- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.10 Å
- Oligo State
- hetero-2-2-2-mer
- Ligands
- 8 x SF4: IRON/SULFUR CLUSTER(Non-covalent)
- 2 x SH0: 3,3',3'',3'''-[(1R,2S,3S,4S,7S,8S,11S,12S,13S,16S,19S)-3,8,13,17-tetrakis(carboxylatomethyl)-8,13-dimethyl-1,2,3,4,7,8,11,12,13,16,19,20,22,24-tetradecahydroporphyrin-2,7,12,18-tetrayl]tetrapropanoate(Non-covalent)
SH0.3: 33 residues within 4Å:- Chain A: C.177, L.178, R.182, C.183, E.184, F.185, N.223, G.224, C.225, N.262, N.311
- Chain B: H.44, I.46, H.54, R.66, R.94, T.96, T.97, R.98, N.100, E.102, G.134, T.135, G.136, S.140, P.181, R.183, K.288, V.289, S.290, R.292, R.336
- Ligands: SF4.1
40 PLIP interactions:7 interactions with chain A, 33 interactions with chain B- Hydrophobic interactions: A:L.178, A:N.311, B:T.96, B:R.98, B:V.289
- Hydrogen bonds: A:L.178, A:N.262, A:N.311, B:T.96, B:T.97, B:N.100, B:G.136, B:S.140, B:R.183, B:V.289, B:S.290, B:S.290, B:S.290
- Water bridges: A:R.231, A:R.231, B:R.94, B:R.94, B:R.98, B:R.98, B:R.183, B:R.292, B:R.292, B:R.292, B:R.336
- Salt bridges: B:H.44, B:H.54, B:R.66, B:R.66, B:R.94, B:R.98, B:R.183, B:R.292, B:R.292, B:R.336, B:R.336
SH0.10: 33 residues within 4Å:- Chain D: C.177, L.178, R.182, C.183, E.184, F.185, N.223, G.224, C.225, N.262, N.311
- Chain E: H.44, L.52, H.54, R.66, R.94, T.96, T.97, R.98, N.100, E.102, G.134, T.135, G.136, S.140, P.181, R.183, K.288, V.289, S.290, R.292, R.336
- Ligands: SF4.8
39 PLIP interactions:32 interactions with chain E, 7 interactions with chain D- Hydrophobic interactions: E:T.96, E:R.98, E:V.289, D:L.178, D:N.223, D:N.311
- Hydrogen bonds: E:T.96, E:T.97, E:N.100, E:G.136, E:S.140, E:R.183, E:V.289, E:S.290, E:S.290, E:S.290, D:L.178, D:N.262, D:N.311
- Water bridges: E:R.94, E:R.94, E:R.98, E:R.98, E:K.288, E:R.292, E:R.292, E:R.292, D:R.231
- Salt bridges: E:H.44, E:H.54, E:R.66, E:R.66, E:R.94, E:R.98, E:R.183, E:R.292, E:R.292, E:R.336, E:R.336
- 2 x SRM: SIROHEME(Non-covalent)
SRM.6: 33 residues within 4Å:- Chain A: I.81, R.83, R.101, G.134, S.135, T.136, G.137, D.138, Y.212, K.213, K.215, K.217, R.231, K.332, A.333, I.335, R.376, R.378
- Chain B: R.71, H.144, T.145, Q.146, H.150, C.151, H.152, N.191, M.192, C.193, G.194
- Chain C: G.103, C.104
- Ligands: SF4.4, SO3.7
44 PLIP interactions:10 interactions with chain B, 33 interactions with chain A, 1 interactions with chain C,- Hydrophobic interactions: B:T.145, B:Q.146, B:N.191, A:A.333
- Water bridges: B:Q.146, B:N.191, B:T.266, A:R.83, A:R.83, A:R.101, A:R.101, A:T.136, A:I.335, A:R.378, A:R.378
- Salt bridges: B:R.71, B:H.150, B:H.152, A:R.83, A:R.83, A:R.101, A:K.213, A:K.213, A:K.215, A:K.215, A:K.217, A:R.231, A:K.332, A:R.376, A:R.378, A:R.378
- Metal complexes: B:C.193
- Hydrogen bonds: A:G.134, A:S.135, A:S.135, A:T.136, A:G.137, A:D.138, A:D.138, A:Y.212, A:A.333, C:C.104
- pi-Cation interactions: A:K.213, A:K.215
SRM.13: 33 residues within 4Å:- Chain D: I.81, R.83, R.101, G.134, S.135, T.136, G.137, D.138, Y.212, K.213, K.215, K.217, R.231, K.332, A.333, I.335, R.376, R.378
- Chain E: R.71, H.144, T.145, Q.146, H.150, C.151, H.152, N.191, M.192, C.193, G.194
- Chain F: G.103, C.104
- Ligands: SF4.11, SO3.14
40 PLIP interactions:10 interactions with chain E, 29 interactions with chain D, 1 interactions with chain F,- Hydrophobic interactions: E:T.145, E:Q.146, E:N.191
- Water bridges: E:Q.146, E:N.191, E:T.266, D:R.83, D:R.101, D:T.136, D:I.335, D:L.336, D:R.378, D:R.378
- Salt bridges: E:R.71, E:H.150, E:H.152, D:R.83, D:R.83, D:R.101, D:K.213, D:K.213, D:K.215, D:K.215, D:K.217, D:R.231, D:K.332, D:R.376, D:R.378, D:R.378
- Metal complexes: E:C.193
- Hydrogen bonds: D:G.134, D:S.135, D:S.135, D:T.136, D:G.137, D:D.138, D:A.333, F:C.104
- pi-Cation interactions: D:K.213, D:K.215
- 2 x SO3: SULFITE ION(Non-covalent)
SO3.7: 6 residues within 4Å:- Chain A: R.101, R.172, K.213, K.215
- Chain C: C.104
- Ligands: SRM.6
9 PLIP interactions:9 interactions with chain A- Hydrogen bonds: A:R.101, A:R.101, A:R.172, A:R.172, A:K.213, A:K.215
- Water bridges: A:T.136, A:T.136, A:R.172
SO3.14: 6 residues within 4Å:- Chain D: R.101, R.172, K.213, K.215
- Chain F: C.104
- Ligands: SRM.13
9 PLIP interactions:9 interactions with chain D- Hydrogen bonds: D:R.101, D:R.101, D:R.172, D:R.172, D:K.213, D:K.213, D:K.215
- Water bridges: D:T.136, D:T.136
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Oliveira, T.F. et al., The Crystal Structure of Desulfovibrio Vulgaris Dissimilatory Sulfite Reductase Bound to Dsrc Provides Novel Insights Into the Mechanism of Sulfate Respiration. J.Biol.Chem. (2008)
- Release Date
- 2008-12-02
- Peptides
- SULFITE REDUCTASE, DISSIMILATORY-TYPE SUBUNIT ALPHA: AD
SULFITE REDUCTASE, DISSIMILATORY-TYPE SUBUNIT BETA: BE
SULFITE REDUCTASE, DISSIMILATORY-TYPE SUBUNIT GAMMA: CF - SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AD
DB
BE
EC
CF
F
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.10 Å
- Oligo State
- hetero-2-2-2-mer
- Ligands
- 8 x SF4: IRON/SULFUR CLUSTER(Non-covalent)
- 2 x SH0: 3,3',3'',3'''-[(1R,2S,3S,4S,7S,8S,11S,12S,13S,16S,19S)-3,8,13,17-tetrakis(carboxylatomethyl)-8,13-dimethyl-1,2,3,4,7,8,11,12,13,16,19,20,22,24-tetradecahydroporphyrin-2,7,12,18-tetrayl]tetrapropanoate(Non-covalent)
- 2 x SRM: SIROHEME(Non-covalent)
- 2 x SO3: SULFITE ION(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Oliveira, T.F. et al., The Crystal Structure of Desulfovibrio Vulgaris Dissimilatory Sulfite Reductase Bound to Dsrc Provides Novel Insights Into the Mechanism of Sulfate Respiration. J.Biol.Chem. (2008)
- Release Date
- 2008-12-02
- Peptides
- SULFITE REDUCTASE, DISSIMILATORY-TYPE SUBUNIT ALPHA: AD
SULFITE REDUCTASE, DISSIMILATORY-TYPE SUBUNIT BETA: BE
SULFITE REDUCTASE, DISSIMILATORY-TYPE SUBUNIT GAMMA: CF - SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AD
DB
BE
EC
CF
F