SMTL ID : 2v5m.1

Structural basis for Dscam isoform specificity

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.95 Å

Oligo State

homo-dimer

Ligands

4 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG-NAG.1: 7 residues within 4Å: Chain A: N.18, S.19, F.66, R.67, A.68, V.102, A.103 No protein-ligand interaction detected (PLIP) NAG-NAG.2: 8 residues within 4Å: Chain A: R.245, V.288, V.289, N.290, G.295, E.296, S.297 Chain B: K.337 4 PLIP interactions: 2 interactions with chain B, 2 interactions with chain A Hydrogen bonds: B:K.337, A:K.256 Water bridges: B:K.337, A:S.297 NAG-NAG.4: 7 residues within 4Å: Chain B: N.18, S.19, F.66, R.67, A.68, V.102, A.103 No protein-ligand interaction detected (PLIP) NAG-NAG.5: 8 residues within 4Å: Chain A: K.337 Chain B: R.245, V.288, V.289, N.290, G.295, E.296, S.297 4 PLIP interactions: 2 interactions with chain A, 2 interactions with chain B Hydrogen bonds: A:K.337, B:K.256 Water bridges: A:K.337, B:S.297

2 x GOL: GLYCEROL(Non-functional Binders)

GOL.3: 11 residues within 4Å: Chain A: S.120, H.167, L.233, C.234, P.235, A.236, F.244, V.268, S.269, G.270, T.271 7 PLIP interactions: 7 interactions with chain A Hydrogen bonds: A:H.167, A:C.234, A:C.234, A:A.236, A:G.270, A:T.271, A:T.271 GOL.6: 11 residues within 4Å: Chain B: S.120, H.167, L.233, C.234, P.235, A.236, F.244, V.268, S.269, G.270, T.271 6 PLIP interactions: 6 interactions with chain B Hydrogen bonds: B:H.167, B:C.234, B:C.234, B:A.236, B:G.270, B:T.271

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Meijers, R. et al., Structural Basis of Dscam Isoform Specificity. Nature (2007)

Release Date

2007-09-11

Peptides

DSCAM: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

DSCAM

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