SMTL ID : 2v5r.1

Structural basis for Dscam isoform specificity

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 3.00 Å

Oligo State

homo-dimer

Ligands

8 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Non-covalent)

NAG.1: 7 residues within 4Å: Chain A: N.18, S.19, P.65, F.66, R.67, A.68 Ligands: NAG.2 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:S.19, A:S.19 NAG.2: 3 residues within 4Å: Chain A: I.103 Ligands: NAG.1, NAG.3 No protein-ligand interaction detected (PLIP) NAG.3: 2 residues within 4Å: Chain A: S.105 Ligands: NAG.2 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:S.105 NAG.4: 4 residues within 4Å: Chain A: V.291, N.293, G.298, E.299 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:N.293, A:G.298, A:E.299 NAG.6: 7 residues within 4Å: Chain B: N.18, S.19, P.65, F.66, R.67, A.68 Ligands: NAG.7 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:S.19, B:S.19 NAG.7: 3 residues within 4Å: Chain B: I.103 Ligands: NAG.6, NAG.8 No protein-ligand interaction detected (PLIP) NAG.8: 2 residues within 4Å: Chain B: S.105 Ligands: NAG.7 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:S.105 NAG.9: 4 residues within 4Å: Chain B: V.291, N.293, G.298, E.299 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:N.293, B:G.298, B:E.299

2 x GOL: GLYCEROL(Non-functional Binders)

GOL.5: 5 residues within 4Å: Chain B: D.111, N.112, E.113, K.124, E.126 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:D.111, B:K.124, B:E.126 GOL.10: 5 residues within 4Å: Chain A: D.111, N.112, E.113, K.124, E.126 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Meijers, R. et al., Structural Basis of Dscam Isoform Specificity. Nature (2007)

Release Date

2007-09-11

Peptides

DSCAM: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

DSCAM