SMTL ID : 2v5t.1

Crystal structure of NCAM2 Ig2-3

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.00 Å

Oligo State

monomer

Ligands

2 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 5 residues within 4Å: Chain A: I.99, S.100, M.101, K.104, K.180 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:I.99, A:M.101 Water bridges: A:K.104 Salt bridges: A:K.104, A:K.180 SO4.2: 2 residues within 4Å: Chain A: K.148 Ligands: GOL.6 1 PLIP interactions: 1 interactions with chain A Salt bridges: A:K.148

2 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Non-covalent)

NAG.3: 3 residues within 4Å: Chain A: N.65, K.66, S.67 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:N.65, A:K.66, A:S.67, A:S.67 NAG.4: 3 residues within 4Å: Chain A: S.105, N.107, F.187 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:N.107 Water bridges: A:Q.103

4 x GOL: GLYCEROL(Non-functional Binders)

GOL.5: 3 residues within 4Å: Chain A: E.127, P.128, A.129 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:P.128 Water bridges: A:E.127 GOL.6: 4 residues within 4Å: Chain A: K.148, G.149, S.150 Ligands: SO4.2 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:G.149, A:S.150 Water bridges: A:L.147, A:K.148, A:S.150, A:N.151 GOL.7: 3 residues within 4Å: Chain A: G.17, D.19, N.63 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:D.19, A:N.63 GOL.8: 6 residues within 4Å: Chain A: R.134, N.135, K.137, L.138, I.139, Y.145 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:N.135, A:K.137 Water bridges: A:E.140, A:Y.145

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Kulahin, N. et al., Structural Model and Trans-Interaction of the Entire Ectodomain of the Olfactory Cell Adhesion Molecule. Structure (2011)

Release Date

2008-07-29

Peptides

NEURAL CELL ADHESION MOLECULE 2: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

NEURAL CELL ADHESION MOLECULE 2