SMTL ID : 2v5y.1

Crystal structure of the receptor protein tyrosine phosphatase mu ectodomain

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 3.10 Å

Oligo State

homo-dimer

Ligands

14 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.1: 1 residues within 4Å: Chain A: N.386 No protein-ligand interaction detected (PLIP) NAG.2: 4 residues within 4Å: Chain A: K.70, N.72, W.131 Chain B: S.272 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:S.272, B:S.272 NAG.3: 5 residues within 4Å: Chain A: N.111, I.112, S.113, R.197, R.243 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:R.197, A:R.243 NAG.4: 5 residues within 4Å: Chain A: E.29, M.43, N.52, S.54, Y.149 2 PLIP interactions: 2 interactions with chain A Hydrophobic interactions: A:N.52 Hydrogen bonds: A:Y.149 NAG.5: 3 residues within 4Å: Chain A: Y.432, N.434, Q.456 1 PLIP interactions: 1 interactions with chain A Hydrophobic interactions: A:Y.432 NAG.6: 6 residues within 4Å: Chain A: S.392, Y.393, N.394, M.442, N.443, P.444 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:S.392, A:N.394 NAG.7: 3 residues within 4Å: Chain A: L.522, N.524, E.525 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:E.525 Hydrogen bonds: A:N.524, A:E.525 NAG.10: 1 residues within 4Å: Chain B: N.386 No protein-ligand interaction detected (PLIP) NAG.11: 4 residues within 4Å: Chain A: S.272 Chain B: K.70, N.72, W.131 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:S.272, A:S.272 NAG.12: 5 residues within 4Å: Chain B: N.111, I.112, S.113, R.197, R.243 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:R.197, B:R.243 NAG.13: 5 residues within 4Å: Chain B: E.29, M.43, N.52, S.54, Y.149 3 PLIP interactions: 3 interactions with chain B Hydrophobic interactions: B:N.52 Hydrogen bonds: B:Y.149, B:Y.149 NAG.14: 3 residues within 4Å: Chain B: Y.432, N.434, Q.456 1 PLIP interactions: 1 interactions with chain B Hydrophobic interactions: B:Y.432 NAG.15: 6 residues within 4Å: Chain B: S.392, Y.393, N.394, M.442, N.443, P.444 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:S.392, B:N.394 NAG.16: 3 residues within 4Å: Chain B: L.522, N.524, E.525 3 PLIP interactions: 3 interactions with chain B Hydrophobic interactions: B:E.525 Hydrogen bonds: B:N.524, B:E.525

4 x NA: SODIUM ION(Non-functional Binders)

NA.8: 5 residues within 4Å: Chain A: Q.20, S.21, D.24, F.26, N.27 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:N.27 NA.9: 3 residues within 4Å: Chain A: L.8, S.47, D.153 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:L.8 NA.17: 5 residues within 4Å: Chain B: Q.20, S.21, D.24, F.26, N.27 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:S.21 NA.18: 3 residues within 4Å: Chain B: L.8, S.47, D.153 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:D.153

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Aricescu, A.R. et al., Structure of a Tyrosine Phosphatase Adhesive Interaction Reveals a Spacer-Clamp Mechanism. Science (2007)

Release Date

2007-09-11

Peptides

RECEPTOR-TYPE TYROSINE-PROTEIN PHOSPHATASE MU: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

RECEPTOR-TYPE TYROSINE-PROTEIN PHOSPHATASE MU