- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.80 Å
- Oligo State
- hetero-8-8-mer
- Ligands
- 8 x MG: MAGNESIUM ION(Non-covalent)
- 8 x CAP: 2-CARBOXYARABINITOL-1,5-DIPHOSPHATE(Non-covalent)
CAP.2: 21 residues within 4Å:- Chain A: T.173, K.175, K.177, K.201, D.203, E.204, H.294, R.295, H.327, K.334, L.335, S.379, G.380, G.381, G.403, G.404
- Chain B: E.60, T.65, W.66, N.123
- Ligands: MG.1
24 PLIP interactions:20 interactions with chain A, 4 interactions with chain B- Hydrogen bonds: A:T.173, A:T.173, A:K.175, A:E.204, A:H.298, A:S.379, A:S.379, A:G.380, A:G.381, A:G.403, A:G.404, B:T.65, B:T.65, B:N.123
- Water bridges: A:K.177, A:G.329, B:E.60
- Salt bridges: A:K.175, A:K.175, A:K.177, A:R.295, A:H.327, A:K.334, A:K.334
CAP.7: 21 residues within 4Å:- Chain A: E.60, T.65, W.66, N.123
- Chain B: T.173, K.175, K.177, K.201, D.203, E.204, H.294, R.295, H.327, K.334, L.335, S.379, G.380, G.381, G.403, G.404
- Ligands: MG.6
21 PLIP interactions:4 interactions with chain A, 17 interactions with chain B- Hydrogen bonds: A:T.65, A:T.65, A:N.123, B:T.173, B:K.175, B:D.203, B:S.379, B:S.379, B:G.380, B:G.381, B:G.403, B:G.404
- Water bridges: A:E.60, B:K.177
- Salt bridges: B:K.175, B:K.175, B:K.177, B:R.295, B:H.327, B:K.334, B:K.334
CAP.11: 22 residues within 4Å:- Chain C: T.173, K.175, K.177, K.201, D.203, E.204, H.294, R.295, H.298, H.327, K.334, L.335, S.379, G.380, G.381, G.403, G.404
- Chain D: E.60, T.65, W.66, N.123
- Ligands: MG.10
26 PLIP interactions:23 interactions with chain C, 3 interactions with chain D- Hydrogen bonds: C:T.173, C:T.173, C:K.175, C:E.204, C:H.298, C:S.379, C:S.379, C:G.380, C:G.381, C:G.403, C:G.404, D:T.65, D:T.65, D:N.123
- Water bridges: C:T.173, C:K.177, C:G.329, C:S.379, C:I.382
- Salt bridges: C:K.175, C:K.175, C:K.177, C:R.295, C:H.327, C:K.334, C:K.334
CAP.16: 21 residues within 4Å:- Chain C: E.60, T.65, W.66, N.123
- Chain D: T.173, K.175, K.177, K.201, D.203, E.204, H.294, R.295, H.327, K.334, L.335, S.379, G.380, G.381, G.403, G.404
- Ligands: MG.15
25 PLIP interactions:22 interactions with chain D, 3 interactions with chain C- Hydrogen bonds: D:T.173, D:K.175, D:E.204, D:S.379, D:S.379, D:G.380, D:G.381, D:G.403, D:G.404, C:T.65, C:T.65, C:N.123
- Water bridges: D:K.177, D:K.177, D:R.295, D:R.295, D:R.295, D:S.328
- Salt bridges: D:K.175, D:K.175, D:K.177, D:R.295, D:H.327, D:K.334, D:K.334
CAP.21: 23 residues within 4Å:- Chain E: T.173, K.175, K.177, K.201, D.203, E.204, H.294, R.295, H.298, H.327, K.334, L.335, S.379, G.380, G.381, F.402, G.403, G.404
- Chain F: E.60, T.65, W.66, N.123
- Ligands: MG.20
23 PLIP interactions:20 interactions with chain E, 3 interactions with chain F- Hydrogen bonds: E:T.173, E:T.173, E:K.175, E:E.204, E:H.298, E:S.379, E:S.379, E:G.380, E:G.381, E:G.403, E:G.404, F:T.65, F:T.65, F:N.123
- Water bridges: E:I.382, E:G.405
- Salt bridges: E:K.175, E:K.175, E:K.177, E:R.295, E:H.327, E:K.334, E:K.334
CAP.27: 22 residues within 4Å:- Chain E: E.60, T.65, W.66, N.123
- Chain F: T.173, K.175, K.177, K.201, D.203, E.204, H.294, R.295, H.298, H.327, K.334, L.335, S.379, G.380, G.381, G.403, G.404
- Ligands: MG.26
20 PLIP interactions:17 interactions with chain F, 3 interactions with chain E- Hydrogen bonds: F:T.173, F:K.175, F:E.204, F:H.298, F:S.379, F:S.379, F:G.380, F:G.381, F:G.403, F:G.404, E:T.65, E:T.65, E:N.123
- Salt bridges: F:K.175, F:K.175, F:K.177, F:R.295, F:H.327, F:K.334, F:K.334
CAP.31: 21 residues within 4Å:- Chain G: T.173, K.175, K.177, K.201, D.203, E.204, H.294, R.295, H.327, K.334, L.335, S.379, G.380, G.381, G.403, G.404
- Chain H: E.60, T.65, W.66, N.123
- Ligands: MG.30
21 PLIP interactions:18 interactions with chain G, 3 interactions with chain H- Hydrogen bonds: G:T.173, G:T.173, G:K.175, G:D.203, G:S.379, G:S.379, G:G.380, G:G.381, G:G.403, G:G.404, H:T.65, H:T.65, H:N.123
- Water bridges: G:G.329
- Salt bridges: G:K.175, G:K.175, G:K.177, G:R.295, G:H.327, G:K.334, G:K.334
CAP.36: 22 residues within 4Å:- Chain G: E.60, T.65, W.66, N.123
- Chain H: T.173, K.175, K.177, K.201, D.203, E.204, H.294, R.295, H.298, H.327, K.334, L.335, S.379, G.380, G.381, G.403, G.404
- Ligands: MG.35
24 PLIP interactions:20 interactions with chain H, 4 interactions with chain G- Hydrogen bonds: H:T.173, H:K.175, H:D.203, H:H.298, H:S.379, H:S.379, H:G.380, H:G.381, H:G.403, H:G.404, G:T.65, G:T.65, G:N.123
- Water bridges: H:K.177, H:K.334, H:I.382, G:E.60
- Salt bridges: H:K.175, H:K.175, H:K.177, H:R.295, H:H.327, H:K.334, H:K.334
- 24 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)
EDO.3: 8 residues within 4Å:- Chain A: K.18, D.19, Y.20, T.23, T.65, W.66, T.67, T.68
Ligand excluded by PLIPEDO.4: 4 residues within 4Å:- Chain A: K.466, F.467, E.468, F.469
Ligand excluded by PLIPEDO.5: 3 residues within 4Å:- Chain A: L.270, G.273
- Chain B: L.270
Ligand excluded by PLIPEDO.8: 8 residues within 4Å:- Chain B: Y.24, G.64, T.65, T.67, T.68, V.69, D.72
- Ligands: EDO.9
Ligand excluded by PLIPEDO.9: 9 residues within 4Å:- Chain B: G.16, V.17, K.18, Y.20, T.65, W.66, T.67, T.68
- Ligands: EDO.8
Ligand excluded by PLIPEDO.12: 7 residues within 4Å:- Chain C: Y.24, T.67, T.68, V.69, D.72, L.77
- Ligands: EDO.13
Ligand excluded by PLIPEDO.13: 8 residues within 4Å:- Chain C: K.18, D.19, Y.20, T.65, W.66, T.67, T.68
- Ligands: EDO.12
Ligand excluded by PLIPEDO.14: 5 residues within 4Å:- Chain C: R.295, S.328, E.336, G.337, F.345
Ligand excluded by PLIPEDO.17: 8 residues within 4Å:- Chain D: Y.24, G.64, T.67, T.68, V.69, D.72, L.77
- Ligands: EDO.18
Ligand excluded by PLIPEDO.18: 9 residues within 4Å:- Chain D: G.16, K.18, D.19, Y.20, T.65, W.66, T.67, T.68
- Ligands: EDO.17
Ligand excluded by PLIPEDO.19: 5 residues within 4Å:- Chain C: L.270, T.271
- Chain D: L.270, G.273, F.274
Ligand excluded by PLIPEDO.22: 6 residues within 4Å:- Chain E: Y.24, G.64, T.68, V.69, D.72
- Ligands: EDO.23
Ligand excluded by PLIPEDO.23: 7 residues within 4Å:- Chain E: K.18, Y.20, T.65, W.66, T.67, T.68
- Ligands: EDO.22
Ligand excluded by PLIPEDO.24: 3 residues within 4Å:- Chain E: Y.20, E.52
- Chain F: F.469
Ligand excluded by PLIPEDO.25: 2 residues within 4Å:- Chain E: L.270
- Chain F: L.270
Ligand excluded by PLIPEDO.28: 7 residues within 4Å:- Chain F: Y.24, G.64, T.68, V.69, D.72, L.77
- Ligands: EDO.29
Ligand excluded by PLIPEDO.29: 7 residues within 4Å:- Chain F: K.18, D.19, T.65, W.66, T.67, T.68
- Ligands: EDO.28
Ligand excluded by PLIPEDO.32: 6 residues within 4Å:- Chain G: Y.24, G.64, T.68, V.69, D.72
- Ligands: EDO.33
Ligand excluded by PLIPEDO.33: 8 residues within 4Å:- Chain G: K.18, D.19, Y.20, T.65, W.66, T.67, T.68
- Ligands: EDO.32
Ligand excluded by PLIPEDO.34: 8 residues within 4Å:- Chain E: D.286, N.287
- Chain G: R.215, K.252, V.255, C.256, E.259
- Chain M: V.63
Ligand excluded by PLIPEDO.37: 2 residues within 4Å:- Chain G: L.270
- Chain H: L.270
Ligand excluded by PLIPEDO.38: 8 residues within 4Å:- Chain H: Y.24, G.64, T.65, T.67, T.68, V.69, D.72
- Ligands: EDO.39
Ligand excluded by PLIPEDO.39: 9 residues within 4Å:- Chain H: V.17, K.18, D.19, Y.20, T.65, W.66, T.67, T.68
- Ligands: EDO.38
Ligand excluded by PLIPEDO.40: 4 residues within 4Å:- Chain H: K.466, F.467, E.468, F.469
Ligand excluded by PLIP- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Karkehabadi, S. et al., Structural Analysis of Altered Large-Subunit Loop-6-Carboxy-Terminus Interactions that Influence Catalytic Efficiency and Co2-O2 Specificity of Ribulose-1,5-Bisphosphate Carboxylase Oxygenase. Biochemistry (2007)
- Release Date
- 2007-07-31
- Peptides
- RIBULOSE BISPHOSPHATE CARBOXYLASE LARGE CHAIN: ABCDEFGH
RIBULOSE BISPHOSPHATE CARBOXYLASE SMALL CHAIN 1: IJKLMNOP - SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
CD
DE
EF
FG
GH
HI
IJ
JK
KL
LM
MN
NO
OP
P
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.80 Å
- Oligo State
- hetero-8-8-mer
- Ligands
- 8 x MG: MAGNESIUM ION(Non-covalent)
- 8 x CAP: 2-CARBOXYARABINITOL-1,5-DIPHOSPHATE(Non-covalent)
- 24 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Karkehabadi, S. et al., Structural Analysis of Altered Large-Subunit Loop-6-Carboxy-Terminus Interactions that Influence Catalytic Efficiency and Co2-O2 Specificity of Ribulose-1,5-Bisphosphate Carboxylase Oxygenase. Biochemistry (2007)
- Release Date
- 2007-07-31
- Peptides
- RIBULOSE BISPHOSPHATE CARBOXYLASE LARGE CHAIN: ABCDEFGH
RIBULOSE BISPHOSPHATE CARBOXYLASE SMALL CHAIN 1: IJKLMNOP - SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
CD
DE
EF
FG
GH
HI
IJ
JK
KL
LM
MN
NO
OP
P