SMTL ID : 2v7v.1

X-ray crystal structure of 5'-fluorodeoxyadenosine synthase from streptomyces cattleya complexed with 5'-fluorodeoxyadenosine

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.94 Å

Oligo State

homo-hexamer

Ligands

6 x 5FD: 5'-FLUORO-5'-DEOXYADENOSINE(Non-covalent)

5FD.1: 18 residues within 4Å: Chain A: D.16, W.50, T.76, Y.77, P.78, T.80, T.155, F.156, Y.157, S.158 Chain B: F.213, N.215, F.254, A.276, R.277, N.278, A.279, A.280 10 PLIP interactions: 4 interactions with chain A, 6 interactions with chain B Hydrogen bonds: A:D.16, A:D.16, A:Y.77, A:S.158, B:N.215, B:R.277, B:A.279 Water bridges: B:R.277 pi-Stacking: B:F.254, B:F.254 5FD.2: 17 residues within 4Å: Chain B: D.16, W.50, T.76, Y.77, P.78, T.80, T.155, F.156, Y.157, S.158 Chain C: F.213, N.215, F.254, A.276, R.277, N.278, A.279 10 PLIP interactions: 6 interactions with chain C, 4 interactions with chain B Hydrogen bonds: C:N.215, C:R.277, C:A.279, B:D.16, B:D.16, B:Y.77, B:S.158 Water bridges: C:R.277 pi-Stacking: C:F.254, C:F.254 5FD.3: 17 residues within 4Å: Chain A: F.213, N.215, F.254, A.276, R.277, N.278, A.279 Chain C: D.16, W.50, T.76, Y.77, P.78, T.80, T.155, F.156, Y.157, S.158 10 PLIP interactions: 6 interactions with chain A, 4 interactions with chain C Hydrogen bonds: A:N.215, A:R.277, A:A.279, C:D.16, C:D.16, C:Y.77, C:S.158 Water bridges: A:R.277 pi-Stacking: A:F.254, A:F.254 5FD.4: 18 residues within 4Å: Chain D: D.16, W.50, T.76, Y.77, P.78, T.80, T.155, F.156, Y.157, S.158 Chain E: F.213, N.215, F.254, A.276, R.277, N.278, A.279, A.280 11 PLIP interactions: 5 interactions with chain D, 6 interactions with chain E Hydrogen bonds: D:D.16, D:D.16, D:T.76, D:Y.77, D:S.158, E:N.215, E:R.277, E:A.279 Water bridges: E:R.277 pi-Stacking: E:F.254, E:F.254 5FD.5: 17 residues within 4Å: Chain E: D.16, W.50, T.76, Y.77, P.78, T.80, T.155, F.156, Y.157, S.158 Chain F: F.213, N.215, F.254, A.276, R.277, N.278, A.279 11 PLIP interactions: 6 interactions with chain F, 5 interactions with chain E Hydrogen bonds: F:N.215, F:R.277, F:A.279, E:D.16, E:D.16, E:T.76, E:Y.77, E:S.158 Water bridges: F:R.277 pi-Stacking: F:F.254, F:F.254 5FD.6: 17 residues within 4Å: Chain D: F.213, N.215, F.254, A.276, R.277, N.278, A.279 Chain F: D.16, W.50, T.76, Y.77, P.78, T.80, T.155, F.156, Y.157, S.158 11 PLIP interactions: 6 interactions with chain D, 5 interactions with chain F Hydrogen bonds: D:N.215, D:R.277, D:A.279, F:D.16, F:D.16, F:T.76, F:Y.77, F:S.158 Water bridges: D:R.277 pi-Stacking: D:F.254, D:F.254

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Zhu, X. et al., Mechanism of enzymatic fluorination in Streptomyces cattleya. J. Am. Chem. Soc. (2007)

Release Date

2008-08-12

Peptides

5'-FLUORO-5'-DEOXYADENOSINE SYNTHASE: ABCDEF

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
A

E
B

F
C

5'-FLUORO-5'-DEOXYADENOSINE SYNTHASE

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