SMTL ID : 2v7w.1

X-ray crystal structure of 5'-fluorodeoxyadenosine synthase s158g mutant complexed with 5'-fluorodeoxyadenosin

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.90 Å

Oligo State

homo-hexamer

Ligands

6 x 5FD: 5'-FLUORO-5'-DEOXYADENOSINE(Non-covalent)

5FD.1: 17 residues within 4Å: Chain A: F.213, N.215, F.254, A.276, R.277, N.278, A.279 Chain C: D.16, W.50, T.76, Y.77, P.78, T.80, T.155, F.156, Y.157, G.158 9 PLIP interactions: 6 interactions with chain A, 3 interactions with chain C Hydrogen bonds: A:N.215, A:R.277, A:A.279, C:D.16, C:D.16, C:Y.77 Water bridges: A:R.277 pi-Stacking: A:F.254, A:F.254 5FD.2: 19 residues within 4Å: Chain A: D.16, L.17, W.50, T.76, Y.77, P.78, T.80, T.155, F.156, Y.157, G.158 Chain B: F.213, N.215, F.254, A.276, R.277, N.278, A.279, A.280 9 PLIP interactions: 6 interactions with chain B, 3 interactions with chain A Hydrogen bonds: B:N.215, B:R.277, B:A.279, A:D.16, A:D.16, A:Y.77 Water bridges: B:R.277 pi-Stacking: B:F.254, B:F.254 5FD.3: 18 residues within 4Å: Chain B: D.16, L.17, W.50, T.76, Y.77, P.78, T.80, T.155, F.156, Y.157, G.158 Chain C: F.213, N.215, F.254, A.276, R.277, N.278, A.279 9 PLIP interactions: 3 interactions with chain B, 6 interactions with chain C Hydrogen bonds: B:D.16, B:D.16, B:Y.77, C:N.215, C:R.277, C:A.279 Water bridges: C:R.277 pi-Stacking: C:F.254, C:F.254 5FD.4: 17 residues within 4Å: Chain D: F.213, N.215, F.254, A.276, R.277, N.278, A.279 Chain F: D.16, W.50, T.76, Y.77, P.78, T.80, T.155, F.156, Y.157, G.158 10 PLIP interactions: 6 interactions with chain D, 4 interactions with chain F Hydrogen bonds: D:N.215, D:R.277, D:A.279, F:D.16, F:D.16, F:T.76, F:Y.77 Water bridges: D:R.277 pi-Stacking: D:F.254, D:F.254 5FD.5: 19 residues within 4Å: Chain D: D.16, L.17, W.50, T.76, Y.77, P.78, T.80, T.155, F.156, Y.157, G.158 Chain E: F.213, N.215, F.254, A.276, R.277, N.278, A.279, A.280 10 PLIP interactions: 6 interactions with chain E, 4 interactions with chain D Hydrogen bonds: E:N.215, E:R.277, E:A.279, D:D.16, D:D.16, D:T.76, D:Y.77 Water bridges: E:R.277 pi-Stacking: E:F.254, E:F.254 5FD.6: 18 residues within 4Å: Chain E: D.16, L.17, W.50, T.76, Y.77, P.78, T.80, T.155, F.156, Y.157, G.158 Chain F: F.213, N.215, F.254, A.276, R.277, N.278, A.279 10 PLIP interactions: 4 interactions with chain E, 6 interactions with chain F Hydrogen bonds: E:D.16, E:D.16, E:T.76, E:Y.77, F:N.215, F:R.277, F:A.279 Water bridges: F:R.277 pi-Stacking: F:F.254, F:F.254

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Zhu, X. et al., Mechanism of enzymatic fluorination in Streptomyces cattleya. J. Am. Chem. Soc. (2007)

Release Date

2008-08-12

Peptides

5'-FLUORO-5'-DEOXYADENOSINE SYNTHASE: ABCDEF

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
A

E
B

F
C

5'-FLUORO-5'-DEOXYADENOSINE SYNTHASE

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