SMTL ID : 2v84.1

Crystal Structure of the Tp0655 (TpPotD) Lipoprotein of Treponema pallidum

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.78 Å

Oligo State

monomer

Ligands

2 x MES: 2-(N-MORPHOLINO)-ETHANESULFONIC ACID(Non-covalent)

MES.1: 8 residues within 4Å: Chain A: W.32, Y.35, N.60, S.80, F.227, Y.256, D.258, K.323 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:N.60, A:S.80 Water bridges: A:N.60 Salt bridges: A:D.258, A:K.323 MES.2: 6 residues within 4Å: Chain A: R.114, E.318, R.319, G.320, T.321, L.322 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:G.320, A:L.322 Salt bridges: A:R.114

5 x CL: CHLORIDE ION(Non-functional Binders)

CL.3: 3 residues within 4Å: Chain A: H.332, A.335, H.336 Ligand excluded by PLIP CL.4: 2 residues within 4Å: Chain A: Y.158, V.205 Ligand excluded by PLIP CL.5: 2 residues within 4Å: Chain A: T.235, M.239 Ligand excluded by PLIP CL.6: 1 residues within 4Å: Chain A: E.229 Ligand excluded by PLIP CL.7: 1 residues within 4Å: Chain A: K.66 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Machius, M. et al., Structural and Biochemical Basis for Polyamine Binding to the Tp0655 Lipoprotein of Treponema Pallidum: Putative Role for Tp0655 (Tppotd) as a Polyamine Receptor. J.Mol.Biol. (2007)

Release Date

2007-09-25

Peptides

SPERMIDINE/PUTRESCINE ABC TRANSPORTER, PERIPLASMIC BINDING PROTEIN: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

SPERMIDINE/PUTRESCINE ABC TRANSPORTER, PERIPLASMIC BINDING PROTEIN