SMTL ID : 2v86.2 (1 other biounit)

Crystal structure of RAG2-PHD finger in complex with H3R2me2aK4me3 peptide

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.05 Å

Oligo State

monomer

Ligands

1 x ALA- DA2- THR- M3L- GLN- THR- ALA- ARG- ALA: H3R2ME2AK4ME3 PEPTIDE(Non-covalent)

ALA-DA2-THR-M3L-GLN-THR-ALA-ARG-ALA.1: 19 residues within 4Å: Chain A: F.8, G.9, Y.10, T.31, K.35, P.36, A.37, M.38, I.39, Y.40, W.48, L.61, I.62, L.64, S.65, E.66, G.67, N.69, Y.71 23 PLIP interactions: 23 interactions with chain A Hydrophobic interactions: A:T.31, A:Y.40, A:W.48, A:W.48, A:L.61, A:Y.71 Hydrogen bonds: A:Y.10, A:T.31, A:M.38, A:M.38, A:Y.40, A:N.69 Water bridges: A:Y.10, A:K.35, A:K.35, A:Y.40, A:S.65, A:S.65 Salt bridges: A:E.66 pi-Cation interactions: A:Y.10, A:Y.40, A:W.48, A:W.48

2 x ZN: ZINC ION(Non-covalent)

ZN.2: 4 residues within 4Å: Chain A: C.14, C.18, H.50, C.53 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.14, A:C.18, A:H.50, A:C.53 ZN.3: 4 residues within 4Å: Chain A: C.41, H.47, C.73, H.76 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.41, A:H.47, A:C.73, A:H.76

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Ramon-Maiques, S. et al., The Plant Homeodomain Finger of Rag2 Recognizes Histone H3 Methylated at Both Lysine-4 and Arginine-2. Proc.Natl.Acad.Sci.USA (2007)

Release Date

2007-12-11

Peptides

VDJ RECOMBINATION-ACTIVATING PROTEIN 2: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

VDJ RECOMBINATION-ACTIVATING PROTEIN 2

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