SMTL ID : 2v8l.1

Carbohydrate-binding of the starch binding domain of Rhizopus oryzae glucoamylase in complex with beta-cyclodextrin and maltoheptaose

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.80 Å

Oligo State

monomer

Ligands

1 x GLC- GLC- GLC- GLC- GLC- GLC- GLC: Cycloheptakis-(1-4)-(alpha-D-glucopyranose)(Non-covalent)

GLC-GLC-GLC-GLC-GLC-GLC-GLC.1: 7 residues within 4Å: Chain A: N.29, Y.32, S.33, K.34, F.58, E.68, W.70 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:N.29, A:N.29

1 x ZN: ZINC ION(Non-covalent)

ZN.2: 2 residues within 4Å: Chain A: A.1, D.12 3 PLIP interactions: 2 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:A.1, A:D.12, H2O.5

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Tung, J.-Y. et al., Crystal Structures of the Starch-Binding Domain from Rhizopus Oryzae Glucoamylase Reveal a Polysaccharide-Binding Path. Biochem.J. (2008)

Release Date

2008-08-19

Peptides

GLUCOAMYLASE A: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

GLUCOAMYLASE A

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