SMTL ID : 2v9b.1

X-ray structure of viscotoxin B2 from Viscum album

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.05 Å

Oligo State

homo-dimer

Ligands

6 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 4 residues within 4Å: Chain A: G.21, S.22, R.25 Chain B: R.25 2 PLIP interactions: 1 interactions with chain B, 1 interactions with chain A Salt bridges: B:R.25 Hydrogen bonds: A:S.22 SO4.2: 4 residues within 4Å: Chain A: K.1, S.2, Y.13, R.23 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:S.2, A:Y.13, A:Y.13 Water bridges: A:R.17 Salt bridges: A:R.23 SO4.3: 3 residues within 4Å: Chain A: N.6, T.7, K.46 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:T.7, A:T.7 Water bridges: A:T.8 Salt bridges: A:K.46 SO4.4: 3 residues within 4Å: Chain A: R.17, S.22, R.23 7 PLIP interactions: 7 interactions with chain A Hydrogen bonds: A:R.23 Water bridges: A:R.17, A:R.17, A:S.22, A:E.24 Salt bridges: A:R.17, A:R.23 SO4.5: 3 residues within 4Å: Chain B: G.21, S.22, R.25 5 PLIP interactions: 5 interactions with chain B Hydrogen bonds: B:S.22, B:S.22 Water bridges: B:G.20, B:R.25 Salt bridges: B:R.25 SO4.6: 4 residues within 4Å: Chain B: S.2, Y.13, R.17, R.23 9 PLIP interactions: 9 interactions with chain B Hydrogen bonds: B:S.2, B:S.2 Water bridges: B:S.2, B:R.10, B:R.17, B:R.17, B:R.17, B:R.23 Salt bridges: B:R.17

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Pal, A. et al., Structures of viscotoxins A1 and B2 from European mistletoe solved using native data alone. Acta Crystallogr. D Biol. Crystallogr. (2008)

Release Date

2008-06-17

Peptides

VISCOTOXIN-B: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

VISCOTOXIN-B