SMTL ID : 2v9g.1

L-RHAMNULOSE-1-PHOSPHATE ALDOLASE FROM ESCHERICHIA COLI (MUTANT Q6Y- L84W-E192A)

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.70 Å

Oligo State

homo-octamer

Ligands

10 x TLA: L(+)-TARTARIC ACID(Non-covalent)

TLA.1: 10 residues within 4Å: Chain A: N.29, G.30, G.31, N.32, E.117, H.141, H.143, H.212 Chain B: E.171 Ligands: ZN.2 8 PLIP interactions: 8 interactions with chain A Hydrogen bonds: A:N.29, A:G.31, A:N.32, A:S.116, A:E.117 Water bridges: A:G.76 Salt bridges: A:H.143, A:H.212 TLA.3: 12 residues within 4Å: Chain B: N.29, G.30, G.31, N.32, S.75, G.76, T.115, S.116, E.117, H.141 Chain C: E.171 Ligands: ZN.5 10 PLIP interactions: 9 interactions with chain B, 1 interactions with chain C Hydrogen bonds: B:N.29, B:N.29, B:G.31, B:N.32, B:G.76, B:S.116, B:S.116, C:E.171 Salt bridges: B:H.141, B:H.143 TLA.4: 2 residues within 4Å: Chain B: S.75, S.116 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:S.75, B:S.75, B:S.116 TLA.6: 11 residues within 4Å: Chain C: N.29, G.30, G.31, N.32, G.76, T.115, E.117, H.141, H.212 Chain D: E.171 Ligands: ZN.7 10 PLIP interactions: 9 interactions with chain C, 1 interactions with chain D Hydrogen bonds: C:N.29, C:G.31, C:G.31, C:N.32, C:G.76, C:E.117, D:E.171 Water bridges: C:S.116 Salt bridges: C:H.141, C:H.212 TLA.8: 12 residues within 4Å: Chain D: N.29, G.30, G.31, N.32, G.76, T.115, S.116, E.117, H.141, H.143, H.212 Ligands: ZN.9 11 PLIP interactions: 11 interactions with chain D Hydrogen bonds: D:N.29, D:G.31, D:N.32, D:G.76, D:T.115, D:E.117 Water bridges: D:S.116, D:S.116, D:H.143 Salt bridges: D:H.143, D:H.212 TLA.10: 10 residues within 4Å: Chain E: N.29, G.30, G.31, N.32, E.117, H.141, H.143, H.212 Chain F: E.171 Ligands: ZN.11 8 PLIP interactions: 8 interactions with chain E Hydrogen bonds: E:N.29, E:G.31, E:N.32, E:S.116, E:E.117 Water bridges: E:G.76 Salt bridges: E:H.143, E:H.212 TLA.12: 12 residues within 4Å: Chain F: N.29, G.30, G.31, N.32, S.75, G.76, T.115, S.116, E.117, H.141 Chain G: E.171 Ligands: ZN.14 10 PLIP interactions: 9 interactions with chain F, 1 interactions with chain G Hydrogen bonds: F:N.29, F:N.29, F:G.31, F:N.32, F:G.76, F:S.116, F:S.116, G:E.171 Salt bridges: F:H.141, F:H.143 TLA.13: 2 residues within 4Å: Chain F: S.75, S.116 3 PLIP interactions: 3 interactions with chain F Hydrogen bonds: F:S.75, F:S.75, F:S.116 TLA.15: 11 residues within 4Å: Chain G: N.29, G.30, G.31, N.32, G.76, T.115, E.117, H.141, H.212 Chain H: E.171 Ligands: ZN.16 10 PLIP interactions: 9 interactions with chain G, 1 interactions with chain H Hydrogen bonds: G:N.29, G:G.31, G:G.31, G:N.32, G:G.76, G:E.117, H:E.171 Water bridges: G:S.116 Salt bridges: G:H.141, G:H.212 TLA.17: 12 residues within 4Å: Chain H: N.29, G.30, G.31, N.32, G.76, T.115, S.116, E.117, H.141, H.143, H.212 Ligands: ZN.18 11 PLIP interactions: 11 interactions with chain H Hydrogen bonds: H:N.29, H:G.31, H:N.32, H:G.76, H:T.115, H:E.117 Water bridges: H:S.116, H:S.116, H:H.143 Salt bridges: H:H.143, H:H.212

8 x ZN: ZINC ION(Non-covalent)

ZN.2: 4 residues within 4Å: Chain A: H.141, H.143, H.212 Ligands: TLA.1 4 PLIP interactions: 3 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:H.141, A:H.143, A:H.212, H2O.1 ZN.5: 5 residues within 4Å: Chain B: H.141, H.143, H.212 Chain C: E.171 Ligands: TLA.3 3 PLIP interactions: 3 interactions with chain B Metal complexes: B:H.141, B:H.143, B:H.212 ZN.7: 5 residues within 4Å: Chain C: H.141, H.143, H.212 Chain D: E.171 Ligands: TLA.6 4 PLIP interactions: 3 interactions with chain C, 1 interactions with chain D Metal complexes: C:H.141, C:H.143, C:H.212, D:E.171 ZN.9: 4 residues within 4Å: Chain D: H.141, H.143, H.212 Ligands: TLA.8 4 PLIP interactions: 3 interactions with chain D, 1 Ligand-Water interactions Metal complexes: D:H.141, D:H.143, D:H.212, H2O.5 ZN.11: 4 residues within 4Å: Chain E: H.141, H.143, H.212 Ligands: TLA.10 4 PLIP interactions: 3 interactions with chain E, 1 Ligand-Water interactions Metal complexes: E:H.141, E:H.143, E:H.212, H2O.6 ZN.14: 5 residues within 4Å: Chain F: H.141, H.143, H.212 Chain G: E.171 Ligands: TLA.12 3 PLIP interactions: 3 interactions with chain F Metal complexes: F:H.141, F:H.143, F:H.212 ZN.16: 5 residues within 4Å: Chain G: H.141, H.143, H.212 Chain H: E.171 Ligands: TLA.15 4 PLIP interactions: 1 interactions with chain H, 3 interactions with chain G Metal complexes: H:E.171, G:H.141, G:H.143, G:H.212 ZN.18: 4 residues within 4Å: Chain H: H.141, H.143, H.212 Ligands: TLA.17 4 PLIP interactions: 3 interactions with chain H, 1 Ligand-Water interactions Metal complexes: H:H.141, H:H.143, H:H.212, H2O.10

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Grueninger, D. et al., Designed Protein-Protein Association. Science (2008)

Release Date

2008-01-22

Peptides

RHAMNULOSE-1-PHOSPHATE ALDOLASE: ABCDEFGH

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

E
A

F
B

G
C

H
D

RHAMNULOSE-1-PHOSPHATE ALDOLASE