SMTL ID : 2v9l.1

L-RHAMNULOSE-1-PHOSPHATE ALDOLASE FROM ESCHERICHIA COLI (MUTANT Q6Y- E192A)

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.23 Å

Oligo State

homo-tetramer

Ligands

4 x ZN: ZINC ION(Non-covalent)

ZN.1: 5 residues within 4Å: Chain A: H.141, H.143, H.212 Ligands: PO4.2, PGO.37 4 PLIP interactions: 3 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:H.141, A:H.143, A:H.212, H2O.21 ZN.15: 5 residues within 4Å: Chain B: H.141, H.143, H.212 Ligands: PGO.9, PO4.16 4 PLIP interactions: 3 interactions with chain B, 1 Ligand-Water interactions Metal complexes: B:H.141, B:H.143, B:H.212, H2O.43 ZN.29: 5 residues within 4Å: Chain C: H.141, H.143, H.212 Ligands: PO4.30, PGO.51 4 PLIP interactions: 3 interactions with chain C, 1 Ligand-Water interactions Metal complexes: C:H.141, C:H.143, C:H.212, H2O.64 ZN.43: 5 residues within 4Å: Chain D: H.141, H.143, H.212 Ligands: PGO.23, PO4.44 4 PLIP interactions: 3 interactions with chain D, 1 Ligand-Water interactions Metal complexes: D:H.141, D:H.143, D:H.212, H2O.86

4 x PO4: PHOSPHATE ION(Non-functional Binders)

PO4.2: 12 residues within 4Å: Chain A: N.29, G.30, G.31, N.32, E.117, H.141, H.143, W.209, H.212 Ligands: ZN.1, ACT.3, PGO.37 7 PLIP interactions: 7 interactions with chain A Hydrogen bonds: A:N.32 Water bridges: A:N.29, A:N.29, A:G.31 Salt bridges: A:H.141, A:H.143, A:H.212 PO4.16: 12 residues within 4Å: Chain B: N.29, G.30, G.31, N.32, E.117, H.141, H.143, W.209, H.212 Ligands: PGO.9, ZN.15, ACT.17 7 PLIP interactions: 7 interactions with chain B Hydrogen bonds: B:N.32 Water bridges: B:N.29, B:N.29, B:G.31 Salt bridges: B:H.141, B:H.143, B:H.212 PO4.30: 12 residues within 4Å: Chain C: N.29, G.30, G.31, N.32, E.117, H.141, H.143, W.209, H.212 Ligands: ZN.29, ACT.31, PGO.51 7 PLIP interactions: 7 interactions with chain C Hydrogen bonds: C:N.32 Water bridges: C:N.29, C:N.29, C:G.31 Salt bridges: C:H.141, C:H.143, C:H.212 PO4.44: 12 residues within 4Å: Chain D: N.29, G.30, G.31, N.32, E.117, H.141, H.143, W.209, H.212 Ligands: PGO.23, ZN.43, ACT.45 7 PLIP interactions: 7 interactions with chain D Hydrogen bonds: D:N.32 Water bridges: D:N.29, D:N.29, D:G.31 Salt bridges: D:H.141, D:H.143, D:H.212

16 x ACT: ACETATE ION(Non-functional Binders)

ACT.3: 7 residues within 4Å: Chain A: N.29, S.75, G.76, T.115, S.116, E.117 Ligands: PO4.2 Ligand excluded by PLIP ACT.4: 6 residues within 4Å: Chain A: S.59, P.119, G.189, T.190, D.191 Ligands: ACT.5 Ligand excluded by PLIP ACT.5: 10 residues within 4Å: Chain A: I.56, S.75, Y.102, V.113, P.114, T.115, S.116, L.118, P.119 Ligands: ACT.4 Ligand excluded by PLIP ACT.6: 5 residues within 4Å: Chain A: G.76, K.77, F.78, N.81 Chain C: D.222 Ligand excluded by PLIP ACT.17: 7 residues within 4Å: Chain B: N.29, S.75, G.76, T.115, S.116, E.117 Ligands: PO4.16 Ligand excluded by PLIP ACT.18: 6 residues within 4Å: Chain B: S.59, P.119, G.189, T.190, D.191 Ligands: ACT.19 Ligand excluded by PLIP ACT.19: 10 residues within 4Å: Chain B: I.56, S.75, Y.102, V.113, P.114, T.115, S.116, L.118, P.119 Ligands: ACT.18 Ligand excluded by PLIP ACT.20: 5 residues within 4Å: Chain A: D.222 Chain B: G.76, K.77, F.78, N.81 Ligand excluded by PLIP ACT.31: 7 residues within 4Å: Chain C: N.29, S.75, G.76, T.115, S.116, E.117 Ligands: PO4.30 Ligand excluded by PLIP ACT.32: 6 residues within 4Å: Chain C: S.59, P.119, G.189, T.190, D.191 Ligands: ACT.33 Ligand excluded by PLIP ACT.33: 10 residues within 4Å: Chain C: I.56, S.75, Y.102, V.113, P.114, T.115, S.116, L.118, P.119 Ligands: ACT.32 Ligand excluded by PLIP ACT.34: 5 residues within 4Å: Chain C: G.76, K.77, F.78, N.81 Chain D: D.222 Ligand excluded by PLIP ACT.45: 7 residues within 4Å: Chain D: N.29, S.75, G.76, T.115, S.116, E.117 Ligands: PO4.44 Ligand excluded by PLIP ACT.46: 6 residues within 4Å: Chain D: S.59, P.119, G.189, T.190, D.191 Ligands: ACT.47 Ligand excluded by PLIP ACT.47: 10 residues within 4Å: Chain D: I.56, S.75, Y.102, V.113, P.114, T.115, S.116, L.118, P.119 Ligands: ACT.46 Ligand excluded by PLIP ACT.48: 5 residues within 4Å: Chain B: D.222 Chain D: G.76, K.77, F.78, N.81 Ligand excluded by PLIP

32 x PGO: S-1,2-PROPANEDIOL(Non-covalent)

PGO.7: 8 residues within 4Å: Chain A: K.23, W.25, T.145, N.146, D.229, E.232, K.233, Q.236 Ligand excluded by PLIP PGO.8: 5 residues within 4Å: Chain A: R.80, Q.83, L.84 Chain C: D.19, L.22 Ligand excluded by PLIP PGO.9: 12 residues within 4Å: Chain A: T.170, E.171, V.174, V.175, L.259, F.263 Chain B: N.29, H.143, P.188, H.212 Ligands: ZN.15, PO4.16 Ligand excluded by PLIP PGO.10: 5 residues within 4Å: Chain A: M.244, K.248 Chain B: V.153, L.154, Y.242 Ligand excluded by PLIP PGO.11: 6 residues within 4Å: Chain A: P.57, L.58, S.59, Q.60, P.61, A.100 Ligand excluded by PLIP PGO.12: 7 residues within 4Å: Chain A: Q.249, T.250, I.251, S.252, E.255 Chain B: W.185, F.211 Ligand excluded by PLIP PGO.13: 7 residues within 4Å: Chain A: T.158, G.181, I.182, E.200, K.203, H.204, L.268 Ligand excluded by PLIP PGO.14: 9 residues within 4Å: Chain A: V.175, S.205, S.217, G.218, P.219, E.223, T.224, L.227 Chain B: R.28 Ligand excluded by PLIP PGO.21: 8 residues within 4Å: Chain B: K.23, W.25, T.145, N.146, D.229, E.232, K.233, Q.236 Ligand excluded by PLIP PGO.22: 5 residues within 4Å: Chain A: D.19, L.22 Chain B: R.80, Q.83, L.84 Ligand excluded by PLIP PGO.23: 12 residues within 4Å: Chain B: T.170, E.171, V.174, V.175, L.259, F.263 Chain D: N.29, H.143, P.188, H.212 Ligands: ZN.43, PO4.44 Ligand excluded by PLIP PGO.24: 5 residues within 4Å: Chain B: M.244, K.248 Chain D: V.153, L.154, Y.242 Ligand excluded by PLIP PGO.25: 6 residues within 4Å: Chain B: P.57, L.58, S.59, Q.60, P.61, A.100 Ligand excluded by PLIP PGO.26: 7 residues within 4Å: Chain B: Q.249, T.250, I.251, S.252, E.255 Chain D: W.185, F.211 Ligand excluded by PLIP PGO.27: 7 residues within 4Å: Chain B: T.158, G.181, I.182, E.200, K.203, H.204, L.268 Ligand excluded by PLIP PGO.28: 9 residues within 4Å: Chain B: V.175, S.205, S.217, G.218, P.219, E.223, T.224, L.227 Chain D: R.28 Ligand excluded by PLIP PGO.35: 8 residues within 4Å: Chain C: K.23, W.25, T.145, N.146, D.229, E.232, K.233, Q.236 Ligand excluded by PLIP PGO.36: 5 residues within 4Å: Chain C: R.80, Q.83, L.84 Chain D: D.19, L.22 Ligand excluded by PLIP PGO.37: 12 residues within 4Å: Chain A: N.29, H.143, P.188, H.212 Chain C: T.170, E.171, V.174, V.175, L.259, F.263 Ligands: ZN.1, PO4.2 Ligand excluded by PLIP PGO.38: 5 residues within 4Å: Chain A: V.153, L.154, Y.242 Chain C: M.244, K.248 Ligand excluded by PLIP PGO.39: 6 residues within 4Å: Chain C: P.57, L.58, S.59, Q.60, P.61, A.100 Ligand excluded by PLIP PGO.40: 7 residues within 4Å: Chain A: W.185, F.211 Chain C: Q.249, T.250, I.251, S.252, E.255 Ligand excluded by PLIP PGO.41: 7 residues within 4Å: Chain C: T.158, G.181, I.182, E.200, K.203, H.204, L.268 Ligand excluded by PLIP PGO.42: 9 residues within 4Å: Chain A: R.28 Chain C: V.175, S.205, S.217, G.218, P.219, E.223, T.224, L.227 Ligand excluded by PLIP PGO.49: 8 residues within 4Å: Chain D: K.23, W.25, T.145, N.146, D.229, E.232, K.233, Q.236 Ligand excluded by PLIP PGO.50: 5 residues within 4Å: Chain B: D.19, L.22 Chain D: R.80, Q.83, L.84 Ligand excluded by PLIP PGO.51: 12 residues within 4Å: Chain C: N.29, H.143, P.188, H.212 Chain D: T.170, E.171, V.174, V.175, L.259, F.263 Ligands: ZN.29, PO4.30 Ligand excluded by PLIP PGO.52: 5 residues within 4Å: Chain C: V.153, L.154, Y.242 Chain D: M.244, K.248 Ligand excluded by PLIP PGO.53: 6 residues within 4Å: Chain D: P.57, L.58, S.59, Q.60, P.61, A.100 Ligand excluded by PLIP PGO.54: 7 residues within 4Å: Chain C: W.185, F.211 Chain D: Q.249, T.250, I.251, S.252, E.255 Ligand excluded by PLIP PGO.55: 7 residues within 4Å: Chain D: T.158, G.181, I.182, E.200, K.203, H.204, L.268 Ligand excluded by PLIP PGO.56: 9 residues within 4Å: Chain C: R.28 Chain D: V.175, S.205, S.217, G.218, P.219, E.223, T.224, L.227 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Grueninger, D. et al., Designed Protein-Protein Association. Science (2008)

Release Date

2008-01-15

Peptides

RHAMNULOSE-1-PHOSPHATE ALDOLASE: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

C
A

D
A

RHAMNULOSE-1-PHOSPHATE ALDOLASE

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