SMTL ID : 2va5.1

X-ray crystal structure of beta secretase complexed with compound 8c

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.75 Å

Oligo State

homo-dimer

Ligands

4 x IOD: IODIDE ION(Non-functional Binders)

IOD.1: 4 residues within 4Å: Chain A: H.108, T.166, E.167, S.168 Ligand excluded by PLIP IOD.2: 1 residues within 4Å: Chain A: K.170 Ligand excluded by PLIP IOD.4: 4 residues within 4Å: Chain B: H.108, T.166, E.167, S.168 Ligand excluded by PLIP IOD.5: 1 residues within 4Å: Chain B: K.170 Ligand excluded by PLIP

2 x C8C: 2-amino-6-[2-(1H-indol-6-yl)ethyl]pyrimidin-4(3H)-one(Non-covalent)

C8C.3: 11 residues within 4Å: Chain A: G.74, L.93, D.95, G.97, Y.134, F.171, I.173, I.181, D.291, G.293 Chain B: Q.136 7 PLIP interactions: 7 interactions with chain A Hydrophobic interactions: A:F.171, A:I.173, A:I.181 Hydrogen bonds: A:G.97, A:G.293 Salt bridges: A:D.95, A:D.291 C8C.6: 11 residues within 4Å: Chain A: Q.136 Chain B: G.74, L.93, D.95, G.97, Y.134, F.171, I.173, I.181, D.291, G.293 7 PLIP interactions: 7 interactions with chain B Hydrophobic interactions: B:F.171, B:I.173, B:I.181 Hydrogen bonds: B:G.97, B:G.293 Salt bridges: B:D.95, B:D.291

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Edwards, P.D. et al., Application of Fragment-Based Lead Generation to the Discovery of Novel, Cyclic Amidine Beta-Secretase Inhibitors with Nanomolar Potency, Cellular Activity, and High Ligand Efficiency. J.Med.Chem. (2007)

Release Date

2007-11-13

Peptides

BETA-SECRETASE 1 .: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

BETA-SECRETASE 1 .

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