SMTL ID : 2vad.1

Monomeric red fluorescent protein, DsRed.M1

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.59 Å

Oligo State

monomer

Ligands

3 x ZN: ZINC ION(Non-covalent)

ZN.1: 4 residues within 4Å: Chain A: H.73, H.191 Ligands: CL.4, CL.5 2 PLIP interactions: 2 interactions with chain A Metal complexes: A:H.73, A:H.191 ZN.2: 3 residues within 4Å: Chain A: D.76, H.219 Ligands: CL.6 3 PLIP interactions: 3 interactions with chain A Metal complexes: A:D.76, A:D.76, A:H.219 ZN.3: 2 residues within 4Å: Chain A: E.142, H.170 2 PLIP interactions: 2 interactions with chain A Metal complexes: A:E.142, A:H.170

3 x CL: CHLORIDE ION(Non-functional Binders)

CL.4: 8 residues within 4Å: Chain A: H.73, P.78, Y.80, L.155, P.188, H.191 Ligands: ZN.1, CL.5 Ligand excluded by PLIP CL.5: 7 residues within 4Å: Chain A: H.73, M.81, L.148, H.191, V.193 Ligands: ZN.1, CL.4 Ligand excluded by PLIP CL.6: 4 residues within 4Å: Chain A: P.74, D.76, H.219 Ligands: ZN.2 Ligand excluded by PLIP

2 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.7: 6 residues within 4Å: Chain A: N.96, F.97, E.98, T.172, C.173, D.174 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:T.172 EDO.8: 4 residues within 4Å: Chain A: E.92, S.94, K.176, V.178 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:S.94

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Strongin, D.E. et al., Structural Rearrangements Near the Chromophore Influence the Maturation Speed and Brightness of Dsred Variants. Protein Eng.Des.Sel. (2007)

Release Date

2007-11-06

Peptides

RED FLUORESCENT PROTEIN: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

RED FLUORESCENT PROTEIN

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