SMTL ID : 2vae.2 (1 other biounit)

Fast maturing red fluorescent protein, DsRed.T4

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.64 Å

Oligo State

homo-tetramer

Ligands

13 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.1: 6 residues within 4Å: Chain A: T.106, Q.107, D.108, K.119, K.121 Chain C: E.26 2 PLIP interactions: 2 interactions with chain A Water bridges: A:T.106, A:Q.107 EDO.2: 5 residues within 4Å: Chain A: K.45, S.201, H.202, I.208, E.210 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:E.210 Water bridges: A:K.45, A:S.201, A:S.201 EDO.3: 6 residues within 4Å: Chain B: T.106, Q.107, D.108, K.119, K.121 Chain D: E.26 4 PLIP interactions: 3 interactions with chain B, 1 interactions with chain D Water bridges: B:K.90, B:T.106, B:Q.107, D:E.26 EDO.4: 6 residues within 4Å: Chain B: K.45, S.201, H.202, N.203, I.208, E.210 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:S.201, B:E.210 EDO.5: 9 residues within 4Å: Chain B: E.19, G.20, S.21, E.26, K.121, F.122, I.123 Chain D: K.121 Ligands: EDO.13 6 PLIP interactions: 2 interactions with chain D, 4 interactions with chain B Water bridges: D:K.121, D:K.121, B:F.27, B:K.121 Hydrogen bonds: B:E.26, B:E.26 EDO.6: 7 residues within 4Å: Chain B: I.77, P.78, P.188, G.189, Y.190, Y.191, H.219 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:G.189, B:H.219 EDO.7: 6 residues within 4Å: Chain A: E.26 Chain C: T.106, Q.107, D.108, K.119, K.121 6 PLIP interactions: 5 interactions with chain C, 1 interactions with chain A Water bridges: C:T.106, C:T.106, C:Q.107, C:V.120, C:V.120, A:G.24 EDO.8: 6 residues within 4Å: Chain C: K.45, S.201, H.202, N.203, I.208, E.210 3 PLIP interactions: 3 interactions with chain C Hydrogen bonds: C:E.210 Water bridges: C:S.201, C:S.201 EDO.9: 7 residues within 4Å: Chain D: I.77, P.78, P.188, G.189, Y.190, Y.191, H.219 2 PLIP interactions: 2 interactions with chain D Hydrogen bonds: D:D.76, D:G.189 EDO.10: 7 residues within 4Å: Chain B: E.26 Chain D: T.106, Q.107, D.108, K.119, K.121 Ligands: EDO.11 3 PLIP interactions: 3 interactions with chain D Water bridges: D:K.90, D:T.106, D:Q.107 EDO.11: 6 residues within 4Å: Chain D: R.17, E.19, K.119, V.120, K.121 Ligands: EDO.10 1 PLIP interactions: 1 interactions with chain D Hydrogen bonds: D:R.17 EDO.12: 6 residues within 4Å: Chain D: K.45, S.201, H.202, N.203, I.208, E.210 3 PLIP interactions: 3 interactions with chain D Hydrogen bonds: D:S.201, D:E.210 Water bridges: D:K.45 EDO.13: 8 residues within 4Å: Chain B: K.121 Chain D: E.19, G.20, S.21, K.121, F.122, I.123 Ligands: EDO.5 5 PLIP interactions: 3 interactions with chain D, 2 interactions with chain B Hydrogen bonds: D:E.19 Water bridges: D:F.27, D:K.121, B:K.121, B:K.121

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Strongin, D.E. et al., Structural Rearrangements Near the Chromophore Influence the Maturation Speed and Brightness of Dsred Variants. Protein Eng.Des.Sel. (2007)

Release Date

2007-11-06

Peptides

RED FLUORESCENT PROTEIN: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
E

B
F

C
G

D
H

RED FLUORESCENT PROTEIN

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