SMTL ID : 2vaq.1

STRUCTURE OF STRICTOSIDINE SYNTHASE IN COMPLEX WITH INHIBITOR

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 3.01 Å

Oligo State

homo-dimer

Ligands

2 x VAW: (2S,3R,4S)-methyl 4-(2-(2-(1H-indol-3-yl)ethylamino)ethyl)-2-((2S,3R,4S,5S,6R)-3,4,5-trihydroxy-6-(hydroxymethyl)tetrahydro-2H-pyran-2-yloxy)-3-vinyl-3,4-dihydro-2H-pyran-5-carboxylate(Non-covalent)

VAW.1: 14 residues within 4Å: Chain A: W.127, Y.129, V.154, I.157, M.158, V.186, F.204, M.254, H.255, E.284, H.285, E.287, L.301, F.302 11 PLIP interactions: 11 interactions with chain A Hydrophobic interactions: A:W.127, A:V.154, A:I.157, A:V.186, A:F.204, A:F.204 Hydrogen bonds: A:H.255, A:H.285, A:H.285 Salt bridges: A:H.285, A:H.285 VAW.2: 16 residues within 4Å: Chain B: W.127, Y.129, V.145, V.154, I.157, V.186, G.188, F.204, M.254, H.255, G.283, E.284, H.285, E.287, L.301, F.302 12 PLIP interactions: 12 interactions with chain B Hydrophobic interactions: B:W.127, B:I.157, B:V.186, B:F.204, B:F.204, B:M.254 Hydrogen bonds: B:H.255, B:G.283, B:H.285, B:H.285 Salt bridges: B:H.285, B:H.285

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Maresh, J.J. et al., Strictosidine synthase: mechanism of a Pictet-Spengler catalyzing enzyme. J. Am. Chem. Soc. (2008)

Release Date

2008-09-16

Peptides

STRICTOSIDINE SYNTHASE: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

STRICTOSIDINE SYNTHASE

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