- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.25 Å
- Oligo State
- homo-trimer
- Ligands
- 6 x MG: MAGNESIUM ION(Non-covalent)
- 36 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)
EDO.3: 5 residues within 4Å:- Chain A: A.91, N.93
- Chain B: K.49, E.50
- Ligands: EDO.27
Ligand excluded by PLIPEDO.4: 5 residues within 4Å:- Chain A: G.429, Y.431
- Chain C: I.446, I.447, N.448
Ligand excluded by PLIPEDO.5: 5 residues within 4Å:- Chain A: W.381, N.384, V.386, R.404, L.406
Ligand excluded by PLIPEDO.6: 8 residues within 4Å:- Chain A: N.304, G.305, T.335, Q.336, S.337
- Chain C: H.345, T.375
- Ligands: PO4.21
Ligand excluded by PLIPEDO.7: 7 residues within 4Å:- Chain A: S.372, D.395
- Chain C: K.396
- Ligands: GOL.18, EDO.34, GOL.45, EDO.61
Ligand excluded by PLIPEDO.8: 4 residues within 4Å:- Chain A: G.420, I.421, V.440, P.441
Ligand excluded by PLIPEDO.9: 2 residues within 4Å:- Chain A: R.209, D.236
Ligand excluded by PLIPEDO.10: 7 residues within 4Å:- Chain B: R.435, G.436, N.444
- Chain C: T.433, R.435
- Ligands: EDO.37, EDO.64
Ligand excluded by PLIPEDO.11: 5 residues within 4Å:- Chain A: N.154, T.155, E.187, R.209, Y.233
Ligand excluded by PLIPEDO.25: 3 residues within 4Å:- Chain A: I.170, Q.217, W.250
Ligand excluded by PLIPEDO.26: 8 residues within 4Å:- Chain A: G.175, W.176, V.177, H.197, S.198, K.199
- Chain C: A.202, H.227
Ligand excluded by PLIPEDO.27: 7 residues within 4Å:- Chain A: L.55, D.61, P.90, A.91, N.93, Y.98
- Ligands: EDO.3
Ligand excluded by PLIPEDO.30: 5 residues within 4Å:- Chain B: A.91, N.93
- Chain C: K.49, E.50
- Ligands: EDO.54
Ligand excluded by PLIPEDO.31: 5 residues within 4Å:- Chain A: I.446, I.447, N.448
- Chain B: G.429, Y.431
Ligand excluded by PLIPEDO.32: 5 residues within 4Å:- Chain B: W.381, N.384, V.386, R.404, L.406
Ligand excluded by PLIPEDO.33: 8 residues within 4Å:- Chain A: H.345, T.375
- Chain B: N.304, G.305, T.335, Q.336, S.337
- Ligands: PO4.48
Ligand excluded by PLIPEDO.34: 7 residues within 4Å:- Chain A: K.396
- Chain B: S.372, D.395
- Ligands: EDO.7, GOL.45, EDO.61, GOL.72
Ligand excluded by PLIPEDO.35: 4 residues within 4Å:- Chain B: G.420, I.421, V.440, P.441
Ligand excluded by PLIPEDO.36: 2 residues within 4Å:- Chain B: R.209, D.236
Ligand excluded by PLIPEDO.37: 7 residues within 4Å:- Chain A: T.433, R.435
- Chain C: R.435, G.436, N.444
- Ligands: EDO.10, EDO.64
Ligand excluded by PLIPEDO.38: 5 residues within 4Å:- Chain B: N.154, T.155, E.187, R.209, Y.233
Ligand excluded by PLIPEDO.52: 3 residues within 4Å:- Chain B: I.170, Q.217, W.250
Ligand excluded by PLIPEDO.53: 8 residues within 4Å:- Chain A: A.202, H.227
- Chain B: G.175, W.176, V.177, H.197, S.198, K.199
Ligand excluded by PLIPEDO.54: 7 residues within 4Å:- Chain B: L.55, D.61, P.90, A.91, N.93, Y.98
- Ligands: EDO.30
Ligand excluded by PLIPEDO.57: 5 residues within 4Å:- Chain A: K.49, E.50
- Chain C: A.91, N.93
- Ligands: EDO.81
Ligand excluded by PLIPEDO.58: 5 residues within 4Å:- Chain B: I.446, I.447, N.448
- Chain C: G.429, Y.431
Ligand excluded by PLIPEDO.59: 5 residues within 4Å:- Chain C: W.381, N.384, V.386, R.404, L.406
Ligand excluded by PLIPEDO.60: 8 residues within 4Å:- Chain B: H.345, T.375
- Chain C: N.304, G.305, T.335, Q.336, S.337
- Ligands: PO4.75
Ligand excluded by PLIPEDO.61: 7 residues within 4Å:- Chain B: K.396
- Chain C: S.372, D.395
- Ligands: EDO.7, GOL.18, EDO.34, GOL.72
Ligand excluded by PLIPEDO.62: 4 residues within 4Å:- Chain C: G.420, I.421, V.440, P.441
Ligand excluded by PLIPEDO.63: 2 residues within 4Å:- Chain C: R.209, D.236
Ligand excluded by PLIPEDO.64: 7 residues within 4Å:- Chain A: R.435, G.436, N.444
- Chain B: T.433, R.435
- Ligands: EDO.10, EDO.37
Ligand excluded by PLIPEDO.65: 5 residues within 4Å:- Chain C: N.154, T.155, E.187, R.209, Y.233
Ligand excluded by PLIPEDO.79: 3 residues within 4Å:- Chain C: I.170, Q.217, W.250
Ligand excluded by PLIPEDO.80: 8 residues within 4Å:- Chain B: A.202, H.227
- Chain C: G.175, W.176, V.177, H.197, S.198, K.199
Ligand excluded by PLIPEDO.81: 7 residues within 4Å:- Chain C: L.55, D.61, P.90, A.91, N.93, Y.98
- Ligands: EDO.57
Ligand excluded by PLIP- 6 x PGR: R-1,2-PROPANEDIOL(Non-covalent)
PGR.12: 4 residues within 4Å:- Chain A: V.96, I.99, R.122, K.124
3 PLIP interactions:3 interactions with chain A- Hydrophobic interactions: A:V.96, A:I.99
- Water bridges: A:R.122
PGR.13: 4 residues within 4Å:- Chain A: D.139, T.140, I.141
- Chain C: N.184
5 PLIP interactions:2 interactions with chain C, 3 interactions with chain A- Hydrophobic interactions: C:N.184
- Water bridges: C:R.149, A:T.140
- Hydrogen bonds: A:D.139, A:T.140
PGR.39: 4 residues within 4Å:- Chain B: V.96, I.99, R.122, K.124
3 PLIP interactions:3 interactions with chain B- Hydrophobic interactions: B:V.96, B:I.99
- Water bridges: B:R.122
PGR.40: 4 residues within 4Å:- Chain A: N.184
- Chain B: D.139, T.140, I.141
5 PLIP interactions:2 interactions with chain A, 3 interactions with chain B- Hydrophobic interactions: A:N.184
- Water bridges: A:R.149, B:T.140
- Hydrogen bonds: B:D.139, B:T.140
PGR.66: 4 residues within 4Å:- Chain C: V.96, I.99, R.122, K.124
3 PLIP interactions:3 interactions with chain C- Hydrophobic interactions: C:V.96, C:I.99
- Water bridges: C:R.122
PGR.67: 4 residues within 4Å:- Chain B: N.184
- Chain C: D.139, T.140, I.141
5 PLIP interactions:2 interactions with chain B, 3 interactions with chain C- Hydrophobic interactions: B:N.184
- Water bridges: B:R.149, C:T.140
- Hydrogen bonds: C:D.139, C:T.140
- 18 x GOL: GLYCEROL(Non-functional Binders)
GOL.14: 8 residues within 4Å:- Chain A: D.415, G.436, C.437, S.438
- Chain B: E.390, C.391, G.410
- Ligands: GOL.42
Ligand excluded by PLIPGOL.15: 10 residues within 4Å:- Chain A: E.390, C.391, G.410, S.412, T.433
- Chain C: D.415, G.436, C.437, S.438
- Ligands: GOL.68
Ligand excluded by PLIPGOL.16: 9 residues within 4Å:- Chain A: V.219, E.258, A.259, L.281, D.282
- Chain C: M.267, D.289, D.291, W.313
Ligand excluded by PLIPGOL.17: 4 residues within 4Å:- Chain A: T.335, F.368
- Chain C: I.398, Y.417
Ligand excluded by PLIPGOL.18: 9 residues within 4Å:- Chain A: I.340, S.342, S.372
- Chain C: S.342, S.372, G.373, K.396
- Ligands: EDO.7, EDO.61
Ligand excluded by PLIPGOL.19: 9 residues within 4Å:- Chain B: R.146, D.179, I.201
- Chain C: R.146, V.177, D.179, I.201
- Ligands: GOL.46, GOL.73
Ligand excluded by PLIPGOL.41: 8 residues within 4Å:- Chain B: D.415, G.436, C.437, S.438
- Chain C: E.390, C.391, G.410
- Ligands: GOL.69
Ligand excluded by PLIPGOL.42: 10 residues within 4Å:- Chain A: D.415, G.436, C.437, S.438
- Chain B: E.390, C.391, G.410, S.412, T.433
- Ligands: GOL.14
Ligand excluded by PLIPGOL.43: 9 residues within 4Å:- Chain A: M.267, D.289, D.291, W.313
- Chain B: V.219, E.258, A.259, L.281, D.282
Ligand excluded by PLIPGOL.44: 4 residues within 4Å:- Chain A: I.398, Y.417
- Chain B: T.335, F.368
Ligand excluded by PLIPGOL.45: 9 residues within 4Å:- Chain A: S.342, S.372, G.373, K.396
- Chain B: I.340, S.342, S.372
- Ligands: EDO.7, EDO.34
Ligand excluded by PLIPGOL.46: 9 residues within 4Å:- Chain A: R.146, V.177, D.179, I.201
- Chain C: R.146, D.179, I.201
- Ligands: GOL.19, GOL.73
Ligand excluded by PLIPGOL.68: 8 residues within 4Å:- Chain A: E.390, C.391, G.410
- Chain C: D.415, G.436, C.437, S.438
- Ligands: GOL.15
Ligand excluded by PLIPGOL.69: 10 residues within 4Å:- Chain B: D.415, G.436, C.437, S.438
- Chain C: E.390, C.391, G.410, S.412, T.433
- Ligands: GOL.41
Ligand excluded by PLIPGOL.70: 9 residues within 4Å:- Chain B: M.267, D.289, D.291, W.313
- Chain C: V.219, E.258, A.259, L.281, D.282
Ligand excluded by PLIPGOL.71: 4 residues within 4Å:- Chain B: I.398, Y.417
- Chain C: T.335, F.368
Ligand excluded by PLIPGOL.72: 9 residues within 4Å:- Chain B: S.342, S.372, G.373, K.396
- Chain C: I.340, S.342, S.372
- Ligands: EDO.34, EDO.61
Ligand excluded by PLIPGOL.73: 9 residues within 4Å:- Chain A: R.146, D.179, I.201
- Chain B: R.146, V.177, D.179, I.201
- Ligands: GOL.19, GOL.46
Ligand excluded by PLIP- 9 x PO4: PHOSPHATE ION(Non-functional Binders)
PO4.20: 4 residues within 4Å:- Chain A: D.167, S.168, V.169, R.171
8 PLIP interactions:8 interactions with chain A- Hydrogen bonds: A:D.167, A:D.167, A:D.167, A:S.168, A:V.169
- Water bridges: A:Y.136, A:S.168
- Salt bridges: A:R.171
PO4.21: 7 residues within 4Å:- Chain A: L.281, N.304, G.305
- Chain C: W.313, H.345, N.347
- Ligands: EDO.6
7 PLIP interactions:4 interactions with chain A, 3 interactions with chain C- Hydrogen bonds: A:G.305, C:N.347, C:N.347
- Water bridges: A:R.256, A:R.256, A:R.256
- Salt bridges: C:H.345
PO4.22: 4 residues within 4Å:- Chain A: R.42, D.46
- Chain C: L.55, V.59
4 PLIP interactions:3 interactions with chain A, 1 interactions with chain C- Hydrogen bonds: A:D.46, C:L.55
- Water bridges: A:R.42
- Salt bridges: A:R.42
PO4.47: 4 residues within 4Å:- Chain B: D.167, S.168, V.169, R.171
8 PLIP interactions:8 interactions with chain B- Hydrogen bonds: B:D.167, B:D.167, B:D.167, B:S.168, B:V.169
- Water bridges: B:Y.136, B:S.168
- Salt bridges: B:R.171
PO4.48: 7 residues within 4Å:- Chain A: W.313, H.345, N.347
- Chain B: L.281, N.304, G.305
- Ligands: EDO.33
7 PLIP interactions:3 interactions with chain A, 4 interactions with chain B- Hydrogen bonds: A:N.347, A:N.347, B:G.305
- Salt bridges: A:H.345
- Water bridges: B:R.256, B:R.256, B:R.256
PO4.49: 4 residues within 4Å:- Chain A: L.55, V.59
- Chain B: R.42, D.46
4 PLIP interactions:3 interactions with chain B, 1 interactions with chain A- Hydrogen bonds: B:D.46, A:L.55
- Water bridges: B:R.42
- Salt bridges: B:R.42
PO4.74: 4 residues within 4Å:- Chain C: D.167, S.168, V.169, R.171
8 PLIP interactions:8 interactions with chain C- Hydrogen bonds: C:D.167, C:D.167, C:D.167, C:S.168, C:V.169
- Water bridges: C:Y.136, C:S.168
- Salt bridges: C:R.171
PO4.75: 7 residues within 4Å:- Chain B: W.313, H.345, N.347
- Chain C: L.281, N.304, G.305
- Ligands: EDO.60
7 PLIP interactions:4 interactions with chain C, 3 interactions with chain B- Hydrogen bonds: C:G.305, B:N.347, B:N.347
- Water bridges: C:R.256, C:R.256, C:R.256
- Salt bridges: B:H.345
PO4.76: 4 residues within 4Å:- Chain B: L.55, V.59
- Chain C: R.42, D.46
4 PLIP interactions:1 interactions with chain B, 3 interactions with chain C- Hydrogen bonds: B:L.55, C:D.46
- Water bridges: C:R.42
- Salt bridges: C:R.42
- 6 x CO2: CARBON DIOXIDE(Non-covalent)
CO2.23: 2 residues within 4Å:- Chain A: R.122, E.185
4 PLIP interactions:4 interactions with chain A- Hydrogen bonds: A:R.122, A:R.122
- Water bridges: A:N.154, A:E.185
CO2.24: 2 residues within 4Å:- Chain A: E.253, A.254
1 PLIP interactions:1 interactions with chain A- Hydrogen bonds: A:A.254
CO2.50: 2 residues within 4Å:- Chain B: R.122, E.185
4 PLIP interactions:4 interactions with chain B- Hydrogen bonds: B:R.122, B:R.122
- Water bridges: B:N.154, B:E.185
CO2.51: 2 residues within 4Å:- Chain B: E.253, A.254
1 PLIP interactions:1 interactions with chain B- Hydrogen bonds: B:A.254
CO2.77: 2 residues within 4Å:- Chain C: R.122, E.185
4 PLIP interactions:4 interactions with chain C- Hydrogen bonds: C:R.122, C:R.122
- Water bridges: C:N.154, C:E.185
CO2.78: 2 residues within 4Å:- Chain C: E.253, A.254
1 PLIP interactions:1 interactions with chain C- Hydrogen bonds: C:A.254
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Muller, J.J. et al., An intersubunit active site between supercoiled parallel beta helices in the trimeric tailspike endorhamnosidase of Shigella flexneri Phage Sf6. Structure (2008)
- Release Date
- 2008-04-01
- Peptides
- TAILSPIKE-PROTEIN: ABC
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
AC
A
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.25 Å
- Oligo State
- homo-trimer
- Ligands
- 6 x MG: MAGNESIUM ION(Non-covalent)
- 36 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)
- 6 x PGR: R-1,2-PROPANEDIOL(Non-covalent)
- 18 x GOL: GLYCEROL(Non-functional Binders)
- 9 x PO4: PHOSPHATE ION(Non-functional Binders)
- 6 x CO2: CARBON DIOXIDE(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Muller, J.J. et al., An intersubunit active site between supercoiled parallel beta helices in the trimeric tailspike endorhamnosidase of Shigella flexneri Phage Sf6. Structure (2008)
- Release Date
- 2008-04-01
- Peptides
- TAILSPIKE-PROTEIN: ABC
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
AC
A