SMTL ID : 2vbn.1

Molecular basis of human XPC gene recognition and cleavage by engineered homing endonuclease heterodimers

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.90 Å

Oligo State

hetero-1-1-mer

Ligands

3 x MG: MAGNESIUM ION(Non-covalent)

MG.1: 5 residues within 4Å: Chain A: G.19 Chain B: D.20 Chain D: A.14 Chain E: A.1 Ligands: MG.4 5 PLIP interactions: 2 interactions with chain B, 1 interactions with chain A, 2 Ligand-Water interactions Metal complexes: B:D.20, B:D.20, A:G.19, H2O.6, H2O.13 MG.4: 10 residues within 4Å: Chain A: G.19, D.20 Chain B: G.19, D.20 Chain C: A.14 Chain D: A.14 Chain E: A.1 Chain F: A.1 Ligands: MG.1, MG.5 2 PLIP interactions: 1 interactions with chain B, 1 interactions with chain A Metal complexes: B:D.20, A:D.20 MG.5: 5 residues within 4Å: Chain A: D.20 Chain B: G.19 Chain C: A.14 Chain F: A.1 Ligands: MG.4 5 PLIP interactions: 2 interactions with chain A, 1 interactions with chain B, 2 Ligand-Water interactions Metal complexes: A:D.20, A:D.20, B:G.19, H2O.6, H2O.13

2 x CA: CALCIUM ION(Non-covalent)

CA.2: 2 residues within 4Å: Chain A: A.134, N.136 5 PLIP interactions: 1 interactions with chain A, 4 Ligand-Water interactions Metal complexes: A:A.134, H2O.4, H2O.4, H2O.4, H2O.7 CA.3: 2 residues within 4Å: Chain B: A.134, N.136 5 PLIP interactions: 1 interactions with chain B, 4 Ligand-Water interactions Metal complexes: B:A.134, H2O.9, H2O.9, H2O.9, H2O.9

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Redondo, P. et al., Molecular Basis of Xeroderma Pigmentosum Group C DNA Recognition by Engineered Meganucleases. Nature (2008)

Release Date

2008-10-28

Peptides

DNA ENDONUCLEASE I-CREI: A
DNA ENDONUCLEASE I-CREI: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

DNA ENDONUCLEASE I-CREI

DNA ENDONUCLEASE I-CREI

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