SMTL ID : 2vbq.1

Structure of AAC(6')-Iy in complex with bisubstrate analog CoA-S- monomethyl-acetylneamine.

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.00 Å

Oligo State

homo-dimer

Ligands

2 x BSJ: (3R,9Z)-17-[(2R,3S,4R,5R,6R)-5-amino-6-{[(1R,2R,3S,4R,6S)-4,6-diamino-2,3-dihydroxycyclohexyl]oxy}-3,4-dihydroxytetrahydro-2H-pyran-2-yl]-3-hydroxy-2,2-dimethyl-4,8,15-trioxo-12-thia-5,9,16-triazaheptadec-9-en-1-yl [(2R,3S,4R,5R)-5-(6-amino-9H-purin-9-yl)-4-hydroxy-3-(phosphonooxy)tetrahydrofuran-2-yl]methyl dihydrogen diphosphate

BSJ.1: 29 residues within 4Å: Chain A: R.38, L.41, W.42, H.45, E.99, G.100, I.101, F.102, V.103, R.108, Q.109, R.110, G.111, V.112, A.113, K.114, D.135, T.136, N.140, I.142, S.143, K.145, V.146, A.149, L.150 Chain B: Y.86, N.88, E.156, V.158 30 PLIP interactions: 25 interactions with chain A, 5 interactions with chain B Hydrophobic interactions: A:E.99, A:F.102, A:V.146 Hydrogen bonds: A:R.38, A:H.45, A:E.99, A:E.99, A:I.101, A:V.103, A:R.108, A:R.108, A:Q.109, A:R.110, A:G.111, A:V.112, A:A.113, A:K.114, A:D.135, A:N.140, B:Y.86, B:N.88, B:E.156 Water bridges: A:W.42, A:R.83, A:R.108, A:Q.109, A:Q.109, A:D.135, B:Y.86, B:Y.86 BSJ.4: 31 residues within 4Å: Chain A: Y.86, N.88, E.156, V.158 Chain B: R.38, L.41, W.42, H.45, E.99, G.100, I.101, F.102, V.103, R.108, Q.109, R.110, G.111, V.112, A.113, K.114, S.134, D.135, T.136, N.140, I.142, S.143, K.145, V.146, H.147, A.149, L.150 32 PLIP interactions: 27 interactions with chain B, 5 interactions with chain A Hydrophobic interactions: B:L.41, B:E.99, B:I.101, B:F.102, B:V.146 Hydrogen bonds: B:R.38, B:H.45, B:E.99, B:E.99, B:I.101, B:V.103, B:R.108, B:R.108, B:Q.109, B:R.110, B:G.111, B:V.112, B:A.113, B:K.114, B:D.135, B:D.135, B:N.140, A:Y.86, A:N.88, A:E.156 Water bridges: B:R.108, B:Q.109, B:Q.109, B:D.135, B:S.143, A:Y.86, A:Y.86

1 x NI: NICKEL (II) ION(Non-covalent)

NI.2: 2 residues within 4Å: Chain A: H.20, D.22 3 PLIP interactions: 3 interactions with chain A Metal complexes: A:H.20, A:D.22, A:D.22

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.3: 7 residues within 4Å: Chain A: E.56, H.62, L.63, S.81, I.82 Chain B: H.84, D.85 6 PLIP interactions: 3 interactions with chain B, 3 interactions with chain A Hydrogen bonds: B:H.84, A:S.81, A:S.81 Water bridges: B:Y.86, B:Y.86, A:H.84

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Magalhaes, M.L. et al., Kinetic and Structural Analysis of Bisubstrate Inhibition of the Salmonella Enterica Aminoglycoside 6'-N-Acetyltransferase. Biochemistry (2008)

Release Date

2008-01-08

Peptides

AMINOGLYCOSIDE 6'-N-ACETYLTRANSFERASE: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

AMINOGLYCOSIDE 6'-N-ACETYLTRANSFERASE

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