SMTL ID : 2vbt.1

Riboflavin kinase Mj0056 from Methanocaldococcus jannaschii in complex with CDP and PO4

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.70 Å

Oligo State

monomer

Ligands

1 x CDP: CYTIDINE-5'-DIPHOSPHATE(Non-covalent)

CDP.1: 19 residues within 4Å: Chain A: S.13, G.14, L.15, G.16, E.17, G.18, R.19, Y.40, G.42, T.43, L.44, N.45, A.110, M.112, K.113, L.114, R.115 Ligands: NA.2, PO4.3 18 PLIP interactions: 18 interactions with chain A Hydrogen bonds: A:G.14, A:G.14, A:G.14, A:G.16, A:E.17, A:G.18, A:R.19, A:T.43, A:A.110, A:M.112, A:L.114, A:R.115, A:R.115 Water bridges: A:R.19, A:R.19, A:T.43 Salt bridges: A:R.19 pi-Stacking: A:Y.40

1 x NA: SODIUM ION(Non-functional Binders)

NA.2: 5 residues within 4Å: Chain A: T.43, N.45, E.107 Ligands: CDP.1, PO4.3 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:T.43, A:T.43, A:N.45, A:E.107

1 x PO4: PHOSPHATE ION(Non-functional Binders)

PO4.3: 9 residues within 4Å: Chain A: G.14, L.15, G.16, E.17, N.45, H.101, E.107 Ligands: CDP.1, NA.2 8 PLIP interactions: 8 interactions with chain A Hydrogen bonds: A:L.15, A:G.16, A:E.17, A:N.45, A:N.45 Water bridges: A:Y.100, A:H.101 Salt bridges: A:H.101

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Ammelburg, M. et al., A Ctp-Dependent Archaeal Riboflavin Kinase Forms a Bridge in the Evolution of Cradle-Loop Barrels. Structure (2007)

Release Date

2007-11-20

Peptides

RIBOFLAVIN KINASE: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

RIBOFLAVIN KINASE

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