- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.05 Å
- Oligo State
- homo-dimer
- Ligands
- 2 x FE2: FE (II) ION(Non-covalent)
- 2 x CO: COBALT (II) ION(Non-covalent)
CO.2: 5 residues within 4Å:- Chain A: K.137, H.170, H.199
- Ligands: FE2.1, HT5.21
3 PLIP interactions:2 interactions with chain A, 1 Ligand-Water interactions- Metal complexes: A:H.170, A:H.199, H2O.8
CO.23: 5 residues within 4Å:- Chain B: K.137, H.170, H.199
- Ligands: FE2.22, HT5.35
3 PLIP interactions:2 interactions with chain B, 1 Ligand-Water interactions- Metal complexes: B:H.170, B:H.199, H2O.15
- 18 x GOL: GLYCEROL(Non-functional Binders)
GOL.3: 8 residues within 4Å:- Chain A: P.4, L.5, K.8, D.9, S.10, L.130, N.131, K.132
Ligand excluded by PLIPGOL.5: 9 residues within 4Å:- Chain A: D.141, S.171, N.172, A.173, H.199, D.202, R.223, F.229
- Ligands: GOL.19
Ligand excluded by PLIPGOL.7: 4 residues within 4Å:- Chain A: K.8, V.83, K.84, G.87
Ligand excluded by PLIPGOL.9: 7 residues within 4Å:- Chain A: N.160, K.164, G.189, V.190, D.191, K.194
- Ligands: EDO.17
Ligand excluded by PLIPGOL.10: 4 residues within 4Å:- Chain A: F.59, F.284, I.288
- Ligands: EDO.8
Ligand excluded by PLIPGOL.11: 6 residues within 4Å:- Chain A: I.98, Y.99, I.100, D.101
- Chain B: L.102, F.104
Ligand excluded by PLIPGOL.12: 6 residues within 4Å:- Chain A: A.173, H.174, N.175, N.176, N.205, Y.208
Ligand excluded by PLIPGOL.14: 6 residues within 4Å:- Chain A: D.101, L.102, P.103, F.104
- Ligands: GOL.15, EDO.26
Ligand excluded by PLIPGOL.15: 7 residues within 4Å:- Chain A: D.101, L.102, P.103, F.104, L.107, D.148
- Ligands: GOL.14
Ligand excluded by PLIPGOL.18: 2 residues within 4Å:- Chain A: R.55, Q.58
Ligand excluded by PLIPGOL.19: 8 residues within 4Å:- Chain A: Y.99, D.141, H.170, R.223, F.229, W.263
- Ligands: GOL.5, HT5.21
Ligand excluded by PLIPGOL.20: 2 residues within 4Å:- Chain A: M.1, E.12
Ligand excluded by PLIPGOL.24: 6 residues within 4Å:- Chain B: N.160, K.164, G.189, V.190, D.191, K.194
Ligand excluded by PLIPGOL.28: 8 residues within 4Å:- Chain B: P.4, L.5, K.8, D.9, S.10, L.130, N.131, K.132
Ligand excluded by PLIPGOL.29: 5 residues within 4Å:- Chain B: D.214, G.246, Y.247, D.249, K.250
Ligand excluded by PLIPGOL.30: 6 residues within 4Å:- Chain B: I.243, G.295, V.296, N.297, V.300
- Ligands: GOL.32
Ligand excluded by PLIPGOL.32: 3 residues within 4Å:- Chain B: G.295, N.297
- Ligands: GOL.30
Ligand excluded by PLIPGOL.34: 7 residues within 4Å:- Chain B: S.171, N.172, A.173, H.174, D.202, R.223, F.229
Ligand excluded by PLIP- 11 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)
EDO.4: 9 residues within 4Å:- Chain A: G.201, T.203, L.221, Y.224, L.230, K.234, R.235, T.238, T.239
2 PLIP interactions:2 interactions with chain A- Hydrogen bonds: A:T.203, A:T.239
EDO.6: 1 residues within 4Å:- Chain A: K.215
1 PLIP interactions:1 interactions with chain A- Water bridges: A:G.193
EDO.8: 5 residues within 4Å:- Chain A: F.18, I.288, K.292, E.298
- Ligands: GOL.10
1 PLIP interactions:1 interactions with chain A- Hydrogen bonds: A:E.298
EDO.13: 5 residues within 4Å:- Chain A: L.5, K.8, D.9, I.11, N.89
2 PLIP interactions:2 interactions with chain A- Hydrogen bonds: A:K.8, A:N.89
EDO.16: 6 residues within 4Å:- Chain A: K.8, M.57, K.62, G.87, I.88, N.89
2 PLIP interactions:2 interactions with chain A- Hydrogen bonds: A:K.62, A:N.89
EDO.17: 6 residues within 4Å:- Chain A: T.186, G.189, V.190, D.191, P.192
- Ligands: GOL.9
1 PLIP interactions:1 interactions with chain A- Hydrogen bonds: A:T.186
EDO.25: 3 residues within 4Å:- Chain B: D.233, N.236, F.290
1 PLIP interactions:1 interactions with chain B- Hydrogen bonds: B:N.236
EDO.26: 6 residues within 4Å:- Chain A: F.104
- Chain B: I.98, Y.99, I.100, D.101
- Ligands: GOL.14
5 PLIP interactions:1 interactions with chain A, 4 interactions with chain B- Water bridges: A:D.101
- Hydrogen bonds: B:Y.99, B:I.100, B:D.101, B:D.101
EDO.27: 3 residues within 4Å:- Chain B: F.18, E.298, K.306
1 PLIP interactions:1 interactions with chain B- Hydrogen bonds: B:K.306
EDO.31: 4 residues within 4Å:- Chain B: D.112, D.116, I.119, E.162
2 PLIP interactions:2 interactions with chain B- Hydrogen bonds: B:D.112, B:E.162
EDO.33: 2 residues within 4Å:- Chain B: K.244, D.245
No protein-ligand interaction detected (PLIP)- 2 x HT5: (4S)-4-(decanoylamino)-5-hydroxy-3,4-dihydro-2H-thiophenium(Non-covalent)
HT5.21: 20 residues within 4Å:- Chain A: H.24, Y.97, Y.99, K.137, H.170, R.223, L.226, F.229, D.256, C.258, I.261, W.263, T.265, A.266, L.274, A.275, W.278
- Ligands: FE2.1, CO.2, GOL.19
11 PLIP interactions:11 interactions with chain A- Hydrophobic interactions: A:L.226, A:F.229, A:I.261, A:A.266, A:L.274, A:A.275, A:W.278
- Hydrogen bonds: A:Y.97, A:Y.99, A:R.223, A:D.256
HT5.35: 21 residues within 4Å:- Chain B: H.24, L.72, Y.97, K.137, H.170, L.226, L.228, F.229, D.256, C.258, I.261, W.263, T.265, A.266, K.267, P.268, Y.270, K.271, W.278
- Ligands: FE2.22, CO.23
12 PLIP interactions:12 interactions with chain B- Hydrophobic interactions: B:L.226, B:L.228, B:F.229, B:F.229, B:I.261, B:T.265, B:K.271, B:W.278
- Hydrogen bonds: B:H.170, B:R.223
- Water bridges: B:Y.99, B:Y.99
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Elias, M. et al., Structural Basis for Natural Lactonase and Promiscuous Phosphotriesterase Activities. J.Mol.Biol. (2008)
- Release Date
- 2008-04-15
- Peptides
- ARYLDIALKYLPHOSPHATASE: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
B
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.05 Å
- Oligo State
- homo-dimer
- Ligands
- 2 x FE2: FE (II) ION(Non-covalent)
- 2 x CO: COBALT (II) ION(Non-covalent)
- 18 x GOL: GLYCEROL(Non-functional Binders)
- 11 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)
- 2 x HT5: (4S)-4-(decanoylamino)-5-hydroxy-3,4-dihydro-2H-thiophenium(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Elias, M. et al., Structural Basis for Natural Lactonase and Promiscuous Phosphotriesterase Activities. J.Mol.Biol. (2008)
- Release Date
- 2008-04-15
- Peptides
- ARYLDIALKYLPHOSPHATASE: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
B