SMTL ID : 2vdb.1

Structure of human serum albumin with S-naproxen and the GA module

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.52 Å

Oligo State

hetero-1-1-mer

Ligands

6 x DKA: DECANOIC ACID(Non-covalent)

DKA.1: 6 residues within 4Å: Chain A: R.112, Y.133, I.137, Y.156, R.181 Ligands: NPS.7 13 PLIP interactions: 13 interactions with chain A Hydrophobic interactions: A:R.112, A:R.112, A:Y.133, A:Y.133, A:Y.133, A:Y.133, A:I.137, A:Y.156, A:Y.156, A:Y.156, A:Y.156 Salt bridges: A:R.112, A:R.181 DKA.2: 12 residues within 4Å: Chain A: R.5, L.9, L.17, Y.145, P.147, L.246, A.249, R.252, A.253, L.278, L.279, S.282 11 PLIP interactions: 11 interactions with chain A Hydrophobic interactions: A:L.9, A:L.17, A:P.147, A:L.246, A:A.253, A:L.278, A:L.279 Hydrogen bonds: A:Y.145, A:S.282, A:S.282 Salt bridges: A:R.252 DKA.3: 8 residues within 4Å: Chain A: S.337, V.339, R.343, P.379, L.382, N.386, R.480 Ligands: DKA.4 8 PLIP interactions: 8 interactions with chain A Hydrophobic interactions: A:P.379, A:L.382, A:L.382, A:N.386 Hydrogen bonds: A:S.337, A:S.337 Salt bridges: A:R.343, A:R.480 DKA.4: 8 residues within 4Å: Chain A: L.382, R.405, Y.406, L.425, L.455, F.483, S.484 Ligands: DKA.3 10 PLIP interactions: 10 interactions with chain A Hydrophobic interactions: A:Y.406, A:Y.406, A:Y.406, A:L.425, A:L.455, A:F.483, A:F.483 Hydrogen bonds: A:Y.406, A:S.484 Salt bridges: A:R.405 DKA.5: 6 residues within 4Å: Chain A: R.204, A.208, D.319, L.322, G.323 Chain B: E.49 2 PLIP interactions: 1 interactions with chain B, 1 interactions with chain A Hydrogen bonds: B:E.49 Hydrophobic interactions: A:L.322 DKA.6: 8 residues within 4Å: Chain A: W.209, R.213, L.214, L.233, L.255, S.282, I.285, A.286 6 PLIP interactions: 6 interactions with chain A Hydrophobic interactions: A:W.209, A:L.233, A:L.255, A:I.285, A:A.286 Salt bridges: A:R.252

1 x NPS: (2S)-2-(6-methoxynaphthalen-2-yl)propanoic acid(Non-covalent)

NPS.7: 10 residues within 4Å: Chain A: I.137, H.141, F.144, L.149, F.152, Y.156, R.181, G.184, K.185 Ligands: DKA.1 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:I.137 Hydrogen bonds: A:Y.156 Salt bridges: A:K.185

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Lejon, S. et al., Structural Basis for the Binding of Naproxen to Human Serum Albumin in the Presence of Fatty Acids and the Ga Module. Acta Crystallogr.,Sect.F (2008)

Release Date

2008-02-26

Peptides

SERUM ALBUMIN: A
PEPTOSTREPTOCOCCAL ALBUMIN-BINDING PROTEIN: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

SERUM ALBUMIN

PEPTOSTREPTOCOCCAL ALBUMIN-BINDING PROTEIN