SMTL ID : 2vdg.1

Barley Aldose Reductase 1 complex with butanol

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.92 Å

Oligo State

monomer

Ligands

1 x NDP: NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE(Non-covalent)

NDP.1: 32 residues within 4Å: Chain A: G.54, T.55, W.56, D.79, Y.84, K.112, H.145, W.146, C.190, N.191, Q.212, Y.238, S.239, P.240, L.241, G.242, S.243, S.244, N.247, A.249, G.266, I.281, P.282, K.283, S.284, S.285, K.286, R.289, E.292, N.293, L.319 Ligands: 1BO.5 32 PLIP interactions: 32 interactions with chain A Hydrophobic interactions: A:W.56, A:L.319 Hydrogen bonds: A:T.55, A:W.56, A:D.79, A:D.79, A:Y.84, A:N.191, A:Q.212, A:S.239, A:L.241, A:G.242, A:S.243, A:S.243, A:N.247, A:K.283, A:S.285, A:N.293, A:N.293 Water bridges: A:R.57, A:G.266, A:G.266, A:K.283, A:K.283, A:R.289, A:R.289, A:R.289 Salt bridges: A:K.283, A:K.286, A:R.289 pi-Stacking: A:Y.238 pi-Cation interactions: A:R.289

3 x SO4: SULFATE ION(Non-functional Binders)

SO4.2: 4 residues within 4Å: Chain A: V.194, N.198, K.230 Ligands: SO4.4 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:N.198 Salt bridges: A:K.230 SO4.3: 2 residues within 4Å: Chain A: K.286, R.289 4 PLIP interactions: 4 interactions with chain A Water bridges: A:R.289, A:R.289 Salt bridges: A:K.286, A:R.289 SO4.4: 4 residues within 4Å: Chain A: T.195, N.198, R.202 Ligands: SO4.2 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:N.198 Water bridges: A:T.195, A:T.195, A:R.202 Salt bridges: A:R.202

2 x 1BO: 1-BUTANOL(Non-covalent)

1BO.5: 7 residues within 4Å: Chain A: W.56, E.83, Y.84, H.145, W.146, L.319 Ligands: NDP.1 2 PLIP interactions: 2 interactions with chain A Hydrophobic interactions: A:E.83, A:Y.84 1BO.6: 4 residues within 4Å: Chain A: E.159, A.160, N.327, H.330 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:A.160

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Olsen, J.G. et al., Barley Aldose Reductase: Structure, Cofactor Binding, and Substrate Recognition in the Aldo/Keto Reductase 4C Family. Proteins: Struct., Funct., Bioinf. (2008)

Release Date

2008-03-11

Peptides

ALDOSE REDUCTASE: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

ALDOSE REDUCTASE

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