SMTL ID : 2vei.1

Structure-based enzyme engineering efforts with an inactive monomeric TIM variant: the importance of a single point mutation for generating an active site with suitable binding properties

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.89 Å

Oligo State

homo-trimer

Ligands

16 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 6 residues within 4Å: Chain A: S.13, G.14 Chain B: S.13, G.14 Chain C: S.13, G.14 Ligand excluded by PLIP SO4.2: 6 residues within 4Å: Chain A: G.14, S.15 Chain B: G.14, S.15 Chain C: G.14, S.15 Ligand excluded by PLIP SO4.3: 3 residues within 4Å: Chain A: R.125, Q.173, E.176 Ligand excluded by PLIP SO4.4: 2 residues within 4Å: Chain A: K.146, K.147 Ligand excluded by PLIP SO4.5: 3 residues within 4Å: Chain A: N.32, H.33, K.57 Ligand excluded by PLIP SO4.6: 0 residues within 4Å: (No contacts) Ligand excluded by PLIP SO4.7: 3 residues within 4Å: Chain B: T.96, N.97, E.98 Ligand excluded by PLIP SO4.8: 2 residues within 4Å: Chain B: S.1, K.2 Ligand excluded by PLIP SO4.9: 2 residues within 4Å: Chain B: R.125, Q.173 Ligand excluded by PLIP SO4.10: 4 residues within 4Å: Chain B: K.12, S.204, G.225, K.227 Ligand excluded by PLIP SO4.11: 4 residues within 4Å: Chain B: T.42, F.43, Q.63, N.64 Ligand excluded by PLIP SO4.12: 4 residues within 4Å: Chain C: K.50, V.59, I.60, N.80 Ligand excluded by PLIP SO4.13: 1 residues within 4Å: Chain C: K.152 Ligand excluded by PLIP SO4.14: 3 residues within 4Å: Chain C: T.96, N.97, E.98 Ligand excluded by PLIP SO4.15: 2 residues within 4Å: Chain C: S.1, K.2 Ligand excluded by PLIP SO4.16: 2 residues within 4Å: Chain C: R.125, Q.173 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Alahuhta, M. et al., Structure-Based Protein Engineering Efforts with a Monomeric Tim Variant: The Importance of a Single Point Mutation for Generating an Active Site with Suitable Binding Properties. Protein Eng.Des.Sel. (2008)

Release Date

2008-02-19

Peptides

GLYCOSOMAL TRIOSEPHOSPHATE ISOMERASE: ABC

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

GLYCOSOMAL TRIOSEPHOSPHATE ISOMERASE