SMTL ID : 2vf2.1

X-ray crystal structure of HsaD from Mycobacterium tuberculosis

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.35 Å

Oligo State

homo-tetramer

Ligands

6 x GOL: GLYCEROL(Non-functional Binders)

GOL.1: 5 residues within 4Å: Chain A: T.73, S.76, R.77, R.212, W.290 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:S.76, A:R.77, A:R.212 GOL.3: 4 residues within 4Å: Chain B: S.163, I.164, N.165, D.170 6 PLIP interactions: 6 interactions with chain B Hydrogen bonds: B:N.165, B:N.165, B:N.165, B:D.170 Water bridges: B:G.161, B:S.163 GOL.4: 5 residues within 4Å: Chain B: D.41, H.105, G.106, Y.111, M.114 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:G.106 Water bridges: B:E.104 GOL.6: 5 residues within 4Å: Chain C: T.73, S.76, R.77, R.212, W.290 3 PLIP interactions: 3 interactions with chain C Hydrogen bonds: C:S.76, C:R.77, C:R.212 GOL.8: 4 residues within 4Å: Chain D: S.163, I.164, N.165, D.170 6 PLIP interactions: 6 interactions with chain D Hydrogen bonds: D:N.165, D:N.165, D:N.165, D:D.170 Water bridges: D:G.161, D:S.163 GOL.9: 5 residues within 4Å: Chain D: D.41, H.105, G.106, Y.111, M.114 2 PLIP interactions: 2 interactions with chain D Hydrogen bonds: D:G.106 Water bridges: D:E.104

4 x SO4: SULFATE ION(Non-functional Binders)

SO4.2: 5 residues within 4Å: Chain A: R.177, R.195, V.196, K.201 Chain B: K.176 5 PLIP interactions: 3 interactions with chain A, 2 interactions with chain B Salt bridges: A:R.177, A:R.195, A:K.201, B:K.176 Water bridges: B:K.176 SO4.5: 3 residues within 4Å: Chain A: K.176 Chain B: R.177, K.201 2 PLIP interactions: 1 interactions with chain A, 1 interactions with chain B Salt bridges: A:K.176, B:K.201 SO4.7: 5 residues within 4Å: Chain C: R.177, R.195, V.196, K.201 Chain D: K.176 5 PLIP interactions: 3 interactions with chain C, 2 interactions with chain D Salt bridges: C:R.177, C:R.195, C:K.201, D:K.176 Water bridges: D:K.176 SO4.10: 3 residues within 4Å: Chain C: K.176 Chain D: R.177, K.201 2 PLIP interactions: 1 interactions with chain C, 1 interactions with chain D Salt bridges: C:K.176, D:K.201

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Lack, N. et al., Structure of Hsad, a Steroid-Degrading Hydrolase, from Mycobacterium Tuberculosis. Acta Crystallogr.,Sect.F (2008)

Release Date

2007-11-06

Peptides

2-HYDROXY-6-OXO-6-PHENYLHEXA-2,4-DIENOATE HYDROLASE BPHD: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
A

D
B

2-HYDROXY-6-OXO-6-PHENYLHEXA-2,4-DIENOATE HYDROLASE BPHD