SMTL ID : 2vfm.1

Low Temperature Structure of P22 Tailspike Protein Fragment (109-666)

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.50 Å

Oligo State

homo-trimer

Ligands

33 x GOL: GLYCEROL(Non-functional Binders)

GOL.1: 2 residues within 4Å: Chain A: N.44, I.67 Ligand excluded by PLIP GOL.2: 4 residues within 4Å: Chain A: K.63, A.64, K.65, F.87 Ligand excluded by PLIP GOL.3: 5 residues within 4Å: Chain A: S.130, E.252, S.253, K.256, W.284 Ligand excluded by PLIP GOL.4: 9 residues within 4Å: Chain A: Q.259, D.288, G.290, A.291, D.292, H.313, G.335, M.336, D.337 Ligand excluded by PLIP GOL.5: 7 residues within 4Å: Chain A: Y.448, S.450, A.451, A.452, K.454, Y.470 Chain B: N.440 Ligand excluded by PLIP GOL.6: 1 residues within 4Å: Chain A: Y.46 Ligand excluded by PLIP GOL.7: 4 residues within 4Å: Chain A: Q.105, T.375, K.376, R.400 Ligand excluded by PLIP GOL.8: 4 residues within 4Å: Chain A: K.65, I.67, E.89, K.121 Ligand excluded by PLIP GOL.9: 3 residues within 4Å: Chain A: T.200, W.258, V.262 Ligand excluded by PLIP GOL.10: 5 residues within 4Å: Chain A: W.208, N.233, Y.270, D.304, Y.305 Ligand excluded by PLIP GOL.11: 6 residues within 4Å: Chain A: H.472, I.473, N.474, G.475, H.503, K.504 Ligand excluded by PLIP GOL.15: 2 residues within 4Å: Chain B: N.44, I.67 Ligand excluded by PLIP GOL.16: 4 residues within 4Å: Chain B: K.63, A.64, K.65, F.87 Ligand excluded by PLIP GOL.17: 5 residues within 4Å: Chain B: S.130, E.252, S.253, K.256, W.284 Ligand excluded by PLIP GOL.18: 9 residues within 4Å: Chain B: Q.259, D.288, G.290, A.291, D.292, H.313, G.335, M.336, D.337 Ligand excluded by PLIP GOL.19: 7 residues within 4Å: Chain B: Y.448, S.450, A.451, A.452, K.454, Y.470 Chain C: N.440 Ligand excluded by PLIP GOL.20: 1 residues within 4Å: Chain B: Y.46 Ligand excluded by PLIP GOL.21: 4 residues within 4Å: Chain B: Q.105, T.375, K.376, R.400 Ligand excluded by PLIP GOL.22: 4 residues within 4Å: Chain B: K.65, I.67, E.89, K.121 Ligand excluded by PLIP GOL.23: 3 residues within 4Å: Chain B: T.200, W.258, V.262 Ligand excluded by PLIP GOL.24: 5 residues within 4Å: Chain B: W.208, N.233, Y.270, D.304, Y.305 Ligand excluded by PLIP GOL.25: 6 residues within 4Å: Chain B: H.472, I.473, N.474, G.475, H.503, K.504 Ligand excluded by PLIP GOL.29: 2 residues within 4Å: Chain C: N.44, I.67 Ligand excluded by PLIP GOL.30: 4 residues within 4Å: Chain C: K.63, A.64, K.65, F.87 Ligand excluded by PLIP GOL.31: 5 residues within 4Å: Chain C: S.130, E.252, S.253, K.256, W.284 Ligand excluded by PLIP GOL.32: 9 residues within 4Å: Chain C: Q.259, D.288, G.290, A.291, D.292, H.313, G.335, M.336, D.337 Ligand excluded by PLIP GOL.33: 7 residues within 4Å: Chain A: N.440 Chain C: Y.448, S.450, A.451, A.452, K.454, Y.470 Ligand excluded by PLIP GOL.34: 1 residues within 4Å: Chain C: Y.46 Ligand excluded by PLIP GOL.35: 4 residues within 4Å: Chain C: Q.105, T.375, K.376, R.400 Ligand excluded by PLIP GOL.36: 4 residues within 4Å: Chain C: K.65, I.67, E.89, K.121 Ligand excluded by PLIP GOL.37: 3 residues within 4Å: Chain C: T.200, W.258, V.262 Ligand excluded by PLIP GOL.38: 5 residues within 4Å: Chain C: W.208, N.233, Y.270, D.304, Y.305 Ligand excluded by PLIP GOL.39: 6 residues within 4Å: Chain C: H.472, I.473, N.474, G.475, H.503, K.504 Ligand excluded by PLIP

6 x SO4: SULFATE ION(Non-functional Binders)

SO4.12: 3 residues within 4Å: Chain A: T.128, V.129, K.195 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:V.129 Water bridges: A:S.130, A:K.195, A:K.195 Salt bridges: A:K.195 SO4.13: 4 residues within 4Å: Chain A: Y.448, D.449, S.450, H.472 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:D.449 Water bridges: A:G.447, A:Y.448 Salt bridges: A:H.472 SO4.26: 3 residues within 4Å: Chain B: T.128, V.129, K.195 5 PLIP interactions: 5 interactions with chain B Hydrogen bonds: B:V.129 Water bridges: B:S.130, B:K.195, B:K.195 Salt bridges: B:K.195 SO4.27: 4 residues within 4Å: Chain B: Y.448, D.449, S.450, H.472 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:D.449 Water bridges: B:G.447, B:Y.448 Salt bridges: B:H.472 SO4.40: 3 residues within 4Å: Chain C: T.128, V.129, K.195 5 PLIP interactions: 5 interactions with chain C Hydrogen bonds: C:V.129 Water bridges: C:T.128, C:K.195, C:K.195 Salt bridges: C:K.195 SO4.41: 4 residues within 4Å: Chain C: Y.448, D.449, S.450, H.472 4 PLIP interactions: 4 interactions with chain C Hydrogen bonds: C:D.449 Water bridges: C:G.447, C:Y.448 Salt bridges: C:H.472

3 x CA: CALCIUM ION(Non-covalent)

CA.14: 5 residues within 4Å: Chain A: L.556 Chain B: L.556 Chain C: L.556 Ligands: CA.28, CA.42 6 PLIP interactions: 1 interactions with chain A, 1 interactions with chain C, 1 interactions with chain B, 3 Ligand-Water interactions Metal complexes: A:L.556, C:L.556, B:L.556, H2O.31, H2O.62, H2O.94 CA.28: 5 residues within 4Å: Chain A: L.556 Chain B: L.556 Chain C: L.556 Ligands: CA.14, CA.42 6 PLIP interactions: 1 interactions with chain A, 1 interactions with chain C, 1 interactions with chain B, 3 Ligand-Water interactions Metal complexes: A:L.556, C:L.556, B:L.556, H2O.31, H2O.62, H2O.94 CA.42: 5 residues within 4Å: Chain A: L.556 Chain B: L.556 Chain C: L.556 Ligands: CA.14, CA.28 6 PLIP interactions: 1 interactions with chain A, 1 interactions with chain C, 1 interactions with chain B, 3 Ligand-Water interactions Metal complexes: A:L.556, C:L.556, B:L.556, H2O.31, H2O.62, H2O.94

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Becker, M. et al., Side-Chain Stacking and Beta-Helix Stability in P22 Tailspike Protein. To be Published

Release Date

2008-12-16

Peptides

BIFUNCTIONAL TAIL PROTEIN: ABC

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

C
A

BIFUNCTIONAL TAIL PROTEIN