SMTL ID : 2vfo.1

Low Temperature Structure of P22 Tailspike Protein Fragment (109-666), Mutant V125L

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.50 Å

Oligo State

homo-trimer

Ligands

21 x GOL: GLYCEROL(Non-functional Binders)

GOL.1: 5 residues within 4Å: Chain A: K.63, A.64, K.65, F.87 Chain C: K.79 Ligand excluded by PLIP GOL.2: 4 residues within 4Å: Chain A: S.130, E.252, K.256, W.284 Ligand excluded by PLIP GOL.3: 6 residues within 4Å: Chain A: Y.448, S.450, A.451, A.452, K.454 Chain B: N.440 Ligand excluded by PLIP GOL.4: 3 residues within 4Å: Chain A: Y.46, G.47, D.69 Ligand excluded by PLIP GOL.5: 3 residues within 4Å: Chain A: K.65, E.89, K.121 Ligand excluded by PLIP GOL.6: 4 residues within 4Å: Chain A: T.200, L.230, W.258, V.262 Ligand excluded by PLIP GOL.7: 5 residues within 4Å: Chain A: W.208, N.233, Y.270, D.304, Y.305 Ligand excluded by PLIP GOL.10: 5 residues within 4Å: Chain A: K.79 Chain B: K.63, A.64, K.65, F.87 Ligand excluded by PLIP GOL.11: 4 residues within 4Å: Chain B: S.130, E.252, K.256, W.284 Ligand excluded by PLIP GOL.12: 6 residues within 4Å: Chain B: Y.448, S.450, A.451, A.452, K.454 Chain C: N.440 Ligand excluded by PLIP GOL.13: 3 residues within 4Å: Chain B: Y.46, G.47, D.69 Ligand excluded by PLIP GOL.14: 3 residues within 4Å: Chain B: K.65, E.89, K.121 Ligand excluded by PLIP GOL.15: 4 residues within 4Å: Chain B: T.200, L.230, W.258, V.262 Ligand excluded by PLIP GOL.16: 5 residues within 4Å: Chain B: W.208, N.233, Y.270, D.304, Y.305 Ligand excluded by PLIP GOL.19: 5 residues within 4Å: Chain B: K.79 Chain C: K.63, A.64, K.65, F.87 Ligand excluded by PLIP GOL.20: 4 residues within 4Å: Chain C: S.130, E.252, K.256, W.284 Ligand excluded by PLIP GOL.21: 6 residues within 4Å: Chain A: N.440 Chain C: Y.448, S.450, A.451, A.452, K.454 Ligand excluded by PLIP GOL.22: 3 residues within 4Å: Chain C: Y.46, G.47, D.69 Ligand excluded by PLIP GOL.23: 3 residues within 4Å: Chain C: K.65, E.89, K.121 Ligand excluded by PLIP GOL.24: 4 residues within 4Å: Chain C: T.200, L.230, W.258, V.262 Ligand excluded by PLIP GOL.25: 5 residues within 4Å: Chain C: W.208, N.233, Y.270, D.304, Y.305 Ligand excluded by PLIP

3 x SO4: SULFATE ION(Non-functional Binders)

SO4.8: 3 residues within 4Å: Chain A: T.128, V.129, K.195 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:V.129 Water bridges: A:T.128, A:S.130 Salt bridges: A:K.195 SO4.17: 3 residues within 4Å: Chain B: T.128, V.129, K.195 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:V.129 Water bridges: B:S.130, B:S.130 Salt bridges: B:K.195 SO4.26: 3 residues within 4Å: Chain C: T.128, V.129, K.195 4 PLIP interactions: 4 interactions with chain C Hydrogen bonds: C:V.129 Water bridges: C:T.128, C:S.130 Salt bridges: C:K.195

3 x CA: CALCIUM ION(Non-covalent)

CA.9: 5 residues within 4Å: Chain A: L.556 Chain B: L.556 Chain C: L.556 Ligands: CA.18, CA.27 6 PLIP interactions: 1 interactions with chain B, 1 interactions with chain A, 1 interactions with chain C, 3 Ligand-Water interactions Metal complexes: B:L.556, A:L.556, C:L.556, H2O.30, H2O.61, H2O.91 CA.18: 5 residues within 4Å: Chain A: L.556 Chain B: L.556 Chain C: L.556 Ligands: CA.9, CA.27 6 PLIP interactions: 1 interactions with chain B, 1 interactions with chain A, 1 interactions with chain C, 3 Ligand-Water interactions Metal complexes: B:L.556, A:L.556, C:L.556, H2O.30, H2O.61, H2O.91 CA.27: 5 residues within 4Å: Chain A: L.556 Chain B: L.556 Chain C: L.556 Ligands: CA.9, CA.18 6 PLIP interactions: 1 interactions with chain B, 1 interactions with chain A, 1 interactions with chain C, 3 Ligand-Water interactions Metal complexes: B:L.556, A:L.556, C:L.556, H2O.30, H2O.61, H2O.91

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Becker, M. et al., Side-Chain Stacking and Beta-Helix Stability in P22 Tailspike Protein. To be Published

Release Date

2008-12-16

Peptides

P22 TAILSPIKE PROTEIN, MUTANT V125L: ABC

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

C
A

P22 TAILSPIKE PROTEIN, MUTANT V125L