SMTL ID : 2vfq.1

Low Temperature Structure of P22 Tailspike Protein Fragment (109-666), Mutant V450A

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.55 Å

Oligo State

homo-trimer

Ligands

12 x GOL: GLYCEROL(Non-functional Binders)

GOL.1: 5 residues within 4Å: Chain A: K.63, A.64, K.65, F.87 Chain B: K.79 3 PLIP interactions: 2 interactions with chain A, 1 interactions with chain B Hydrogen bonds: A:A.64, B:K.79 Water bridges: A:A.64 GOL.2: 4 residues within 4Å: Chain A: S.130, E.252, K.256, W.284 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:K.256 Water bridges: A:S.225, A:E.252, A:E.252, A:S.253 GOL.3: 6 residues within 4Å: Chain A: Y.448, S.450, A.452, K.454, Y.470 Chain C: N.440 8 PLIP interactions: 2 interactions with chain B, 5 interactions with chain A, 1 interactions with chain C Water bridges: B:N.432, B:N.432, A:Y.448, A:Y.448, A:Y.470, C:N.440 Hydrogen bonds: A:S.450, A:K.454 GOL.4: 4 residues within 4Å: Chain A: T.200, L.230, W.258, V.262 1 PLIP interactions: 1 interactions with chain A Water bridges: A:R.178 GOL.8: 5 residues within 4Å: Chain B: K.63, A.64, K.65, F.87 Chain C: K.79 3 PLIP interactions: 1 interactions with chain C, 2 interactions with chain B Hydrogen bonds: C:K.79, B:A.64 Water bridges: B:A.64 GOL.9: 4 residues within 4Å: Chain B: S.130, E.252, K.256, W.284 6 PLIP interactions: 6 interactions with chain B Hydrogen bonds: B:E.252, B:K.256 Water bridges: B:S.225, B:E.252, B:E.252, B:S.253 GOL.10: 6 residues within 4Å: Chain A: N.440 Chain B: Y.448, S.450, A.452, K.454, Y.470 9 PLIP interactions: 1 interactions with chain A, 2 interactions with chain C, 6 interactions with chain B Water bridges: A:N.440, C:N.432, C:N.432, B:Y.448, B:Y.448, B:Y.448, B:Y.470 Hydrogen bonds: B:S.450, B:K.454 GOL.11: 4 residues within 4Å: Chain B: T.200, L.230, W.258, V.262 1 PLIP interactions: 1 interactions with chain B Water bridges: B:R.178 GOL.15: 5 residues within 4Å: Chain A: K.79 Chain C: K.63, A.64, K.65, F.87 3 PLIP interactions: 2 interactions with chain C, 1 interactions with chain A Hydrogen bonds: C:A.64, A:K.79 Water bridges: C:A.64 GOL.16: 4 residues within 4Å: Chain C: S.130, E.252, K.256, W.284 6 PLIP interactions: 6 interactions with chain C Hydrogen bonds: C:E.252, C:K.256 Water bridges: C:S.225, C:E.252, C:E.252, C:S.253 GOL.17: 6 residues within 4Å: Chain B: N.440 Chain C: Y.448, S.450, A.452, K.454, Y.470 8 PLIP interactions: 5 interactions with chain C, 2 interactions with chain A, 1 interactions with chain B Hydrogen bonds: C:S.450, C:K.454 Water bridges: C:Y.448, C:Y.448, C:Y.470, A:N.432, A:N.432, B:N.440 GOL.18: 4 residues within 4Å: Chain C: T.200, L.230, W.258, V.262 1 PLIP interactions: 1 interactions with chain C Water bridges: C:R.178

6 x SO4: SULFATE ION(Non-functional Binders)

SO4.5: 3 residues within 4Å: Chain A: T.128, V.129, K.195 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:V.129 Water bridges: A:T.128, A:S.130 Salt bridges: A:K.195 SO4.6: 2 residues within 4Å: Chain A: G.137, T.140 3 PLIP interactions: 3 interactions with chain A Water bridges: A:G.137, A:T.140, A:T.140 SO4.12: 3 residues within 4Å: Chain B: T.128, V.129, K.195 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:V.129 Water bridges: B:S.130, B:S.130 Salt bridges: B:K.195 SO4.13: 2 residues within 4Å: Chain B: G.137, T.140 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:T.140 Water bridges: B:G.137, B:G.137 SO4.19: 3 residues within 4Å: Chain C: T.128, V.129, K.195 4 PLIP interactions: 4 interactions with chain C Hydrogen bonds: C:V.129 Water bridges: C:S.130, C:S.130 Salt bridges: C:K.195 SO4.20: 2 residues within 4Å: Chain C: G.137, T.140 3 PLIP interactions: 3 interactions with chain C Water bridges: C:G.137, C:T.140, C:T.140

3 x CA: CALCIUM ION(Non-covalent)

CA.7: 5 residues within 4Å: Chain A: L.556 Chain B: L.556 Chain C: L.556 Ligands: CA.14, CA.21 6 PLIP interactions: 1 interactions with chain C, 1 interactions with chain B, 1 interactions with chain A, 3 Ligand-Water interactions Metal complexes: C:L.556, B:L.556, A:L.556, H2O.31, H2O.62, H2O.94 CA.14: 5 residues within 4Å: Chain A: L.556 Chain B: L.556 Chain C: L.556 Ligands: CA.7, CA.21 6 PLIP interactions: 1 interactions with chain C, 1 interactions with chain B, 1 interactions with chain A, 3 Ligand-Water interactions Metal complexes: C:L.556, B:L.556, A:L.556, H2O.31, H2O.62, H2O.94 CA.21: 5 residues within 4Å: Chain A: L.556 Chain B: L.556 Chain C: L.556 Ligands: CA.7, CA.14 6 PLIP interactions: 1 interactions with chain C, 1 interactions with chain B, 1 interactions with chain A, 3 Ligand-Water interactions Metal complexes: C:L.556, B:L.556, A:L.556, H2O.31, H2O.62, H2O.94

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Becker, M. et al., Side-Chain Stacking and Beta-Helix Stability in P22 Tailspike Protein. To be Published

Release Date

2008-12-16

Peptides

P22 TAILSPIKE PROTEIN,: ABC

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

C
A

P22 TAILSPIKE PROTEIN,