SMTL ID : 2vg0.1

Rv1086 citronellyl pyrophosphate complex

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.70 Å

Oligo State

homo-dimer

Ligands

2 x GPP: GERANYL DIPHOSPHATE(Non-covalent)

GPP.1: 17 residues within 4Å: Chain A: C.10, D.11, G.12, N.13, R.14, R.15, Y.29, G.32, A.33, I.36, Y.54, L.55, N.60, R.63, L.71, I.74, W.209 19 PLIP interactions: 19 interactions with chain A Hydrophobic interactions: A:A.33, A:I.36, A:L.71, A:I.74 Hydrogen bonds: A:C.10, A:D.11, A:G.12, A:G.12, A:N.13, A:N.13, A:R.14, A:R.15, A:Y.29, A:R.63, A:R.63 Water bridges: A:R.14 Salt bridges: A:R.14, A:R.14, A:R.15 GPP.3: 16 residues within 4Å: Chain B: C.10, D.11, G.12, N.13, R.14, R.15, Y.29, G.32, A.33, I.36, Y.54, L.55, N.60, R.63, I.74, W.209 15 PLIP interactions: 15 interactions with chain B Hydrophobic interactions: B:A.33, B:I.36, B:I.74 Hydrogen bonds: B:C.10, B:G.12, B:G.12, B:N.13, B:N.13, B:R.14, B:R.15 Water bridges: B:R.63 Salt bridges: B:R.14, B:R.14, B:R.15, B:R.63

3 x GOL: GLYCEROL(Non-functional Binders)

GOL.2: 7 residues within 4Å: Chain A: E.134, D.137, A.138, A.141, N.168, L.169, Y.170 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:E.134, A:L.169, A:Y.170 GOL.4: 7 residues within 4Å: Chain B: E.134, D.137, A.138, A.141, N.168, L.169, Y.170 8 PLIP interactions: 8 interactions with chain B Hydrogen bonds: B:E.134, B:D.137, B:Y.170 Water bridges: B:A.141, B:N.168, B:N.168, B:L.169, B:L.169 GOL.5: 3 residues within 4Å: Chain B: R.213, H.214, V.215 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:H.214 Water bridges: B:E.38, B:W.42

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Wang, W. et al., The structural basis of chain length control in Rv1086. J. Mol. Biol. (2008)

Release Date

2007-11-13

Peptides

SHORT-CHAIN Z-ISOPRENYL DIPHOSPHATE SYNTHETASE: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

SHORT-CHAIN Z-ISOPRENYL DIPHOSPHATE SYNTHETASE

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