SMTL ID : 2vg3.2 (1 other biounit)

Rv2361 with citronellyl pyrophosphate

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.80 Å

Oligo State

homo-dimer

Ligands

2 x MG: MAGNESIUM ION(Non-covalent)

MG.1: 3 residues within 4Å: Chain A: D.64, R.68 Ligands: GPP.2 4 PLIP interactions: 1 interactions with chain A, 3 Ligand-Water interactions Metal complexes: A:D.64, H2O.2, H2O.4, H2O.5 MG.7: 3 residues within 4Å: Chain B: D.64, R.68 Ligands: GPP.8 4 PLIP interactions: 1 interactions with chain B, 3 Ligand-Water interactions Metal complexes: B:D.64, H2O.5, H2O.5, H2O.8

2 x GPP: GERANYL DIPHOSPHATE(Non-covalent)

GPP.2: 15 residues within 4Å: Chain A: M.63, D.64, G.65, N.66, G.67, R.68, R.77, H.81, G.84, Y.106, A.107, N.112, R.115, Y.179 Ligands: MG.1 12 PLIP interactions: 12 interactions with chain A Hydrogen bonds: A:G.65, A:G.65, A:N.66, A:G.67, A:R.68 Water bridges: A:D.64, A:D.64 Salt bridges: A:R.68, A:R.77, A:R.77, A:H.81, A:R.115 GPP.8: 15 residues within 4Å: Chain A: R.280 Chain B: M.63, D.64, G.65, N.66, G.67, R.68, R.77, H.81, A.107, R.115, N.127, Y.179 Ligands: PO4.4, MG.7 16 PLIP interactions: 13 interactions with chain B, 3 interactions with chain A Hydrophobic interactions: B:A.107 Hydrogen bonds: B:D.64, B:G.65, B:G.65, B:N.66, B:G.67, B:R.68 Water bridges: B:R.77, A:R.280, A:R.280 Salt bridges: B:R.68, B:R.77, B:R.77, B:H.81, B:R.115, A:R.280

2 x PO4: PHOSPHATE ION(Non-functional Binders)

PO4.3: 7 residues within 4Å: Chain A: R.232, R.238, S.240 Chain B: Y.249, R.280, F.281, G.282 12 PLIP interactions: 8 interactions with chain A, 4 interactions with chain B Hydrogen bonds: A:S.240, A:S.240, B:G.282 Water bridges: A:D.64, A:R.115, A:R.232, A:R.238, B:R.280, B:F.281, B:S.283 Salt bridges: A:R.232, A:R.238 PO4.4: 3 residues within 4Å: Chain A: R.280, F.281 Ligands: GPP.8 4 PLIP interactions: 3 interactions with chain A, 1 interactions with chain B Hydrogen bonds: A:F.281 Water bridges: A:R.280, B:R.77 Salt bridges: A:R.280

2 x CL: CHLORIDE ION(Non-functional Binders)

CL.5: 3 residues within 4Å: Chain A: R.54, T.278, R.279 Ligand excluded by PLIP CL.6: 3 residues within 4Å: Chain A: W.155, R.156, S.157 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Wang, W. et al., The structural basis of chain length control in Rv1086. J. Mol. Biol. (2008)

Release Date

2008-05-06

Peptides

UNDECAPRENYL PYROPHOSPHATE SYNTHETASE: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

B
D

UNDECAPRENYL PYROPHOSPHATE SYNTHETASE

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