SMTL ID : 2vgn.2 (1 other biounit)

Structure of S. cerevisiae Dom34, a translation termination-like factor involved in RNA quality control pathways and interacting with Hbs1 (SelenoMet-labeled protein)

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.51 Å

Oligo State

monomer

Ligands

2 x GOL: GLYCEROL(Non-functional Binders)

GOL.1: 4 residues within 4Å: Chain A: E.40, K.66, V.88, T.89 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:K.66, A:T.89 Water bridges: A:G.102 GOL.2: 7 residues within 4Å: Chain A: F.125, K.128, M.339, E.343, A.349, L.350, V.351 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:K.128, A:K.128, A:E.343, A:V.351

1 x PO4: PHOSPHATE ION(Non-functional Binders)

PO4.3: 4 residues within 4Å: Chain A: H.290, K.293, D.295, K.297 6 PLIP interactions: 6 interactions with chain A Water bridges: A:K.293, A:K.293, A:D.295 Salt bridges: A:H.290, A:K.293, A:K.297

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Graille, M. et al., Structure of Yeast Dom34: A Protein Related to Translation Termination Factor Erf1 and Involved in No-Go Decay. J.Biol.Chem. (2008)

Release Date

2008-01-22

Peptides

DOM34: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

DOM34

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