SMTL ID : 2vgq.1

Crystal Structure of Human IPS-1 CARD

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.10 Å

Oligo State

monomer

Ligands

1 x GLC- GLC- GLC- GLC: alpha-D-glucopyranose-(1-4)-alpha-D-glucopyranose-(1-4)-alpha-D-glucopyranose-(1-4)-alpha-D-glucopyranose(Non-covalent)

GLC-GLC-GLC-GLC.1: 20 residues within 4Å: Chain A: N.27, D.29, K.30, K.57, E.59, E.60, W.77, A.78, D.80, R.81, E.126, E.168, P.169, Y.170, F.171, W.245, M.345, W.355, Y.356, R.359 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:E.59 Water bridges: A:K.57

5 x SO4: SULFATE ION(Non-functional Binders)

SO4.2: 3 residues within 4Å: Chain A: P.55, D.56, K.61 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:D.56 Water bridges: A:K.61, A:K.61 Salt bridges: A:K.61 SO4.3: 5 residues within 4Å: Chain A: R.425, H.441, N.444, T.445, R.448 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:N.444 Salt bridges: A:R.425, A:H.441, A:R.448 SO4.4: 2 residues within 4Å: Chain A: R.448, R.449 2 PLIP interactions: 2 interactions with chain A Salt bridges: A:R.448, A:R.449 SO4.5: 2 residues within 4Å: Chain A: N.249, K.312 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:N.249 Water bridges: A:D.29 Salt bridges: A:K.312 SO4.6: 3 residues within 4Å: Chain A: G.28, H.54, D.56 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:D.56 Water bridges: A:G.28 Salt bridges: A:H.54

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Potter, J.A. et al., Crystal Structure of Human Ips-1 Caspase Activation Recruitment Domain. Bmc Struct.Biol. (2008)

Release Date

2007-12-11

Peptides

Sugar ABC transporter substrate-binding protein,Mitochondrial antiviral-signaling protein: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Sugar ABC transporter substrate-binding protein,Mitochondrial antiviral-signaling protein