SMTL ID : 2vha.1

DEBP

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.00 Å

Oligo State

homo-dimer

Ligands

2 x GLU: GLUTAMIC ACID(Non-covalent)

GLU.1: 14 residues within 4Å: Chain A: R.24, S.72, R.75, S.90, T.91, T.92, R.97, T.139, T.140, H.164, M.181, D.182, L.185, Y.211 13 PLIP interactions: 13 interactions with chain A, Hydrophobic interactions: A:T.139, A:L.185 Hydrogen bonds: A:S.27, A:S.27, A:T.92, A:T.92, A:T.140, A:T.140 Salt bridges: A:R.24, A:R.75, A:R.75, A:R.97, A:H.164 GLU.3: 14 residues within 4Å: Chain B: R.24, S.72, R.75, S.90, T.91, T.92, R.97, T.139, T.140, H.164, M.181, D.182, L.185, Y.211 14 PLIP interactions: 14 interactions with chain B, Hydrophobic interactions: B:T.139, B:L.185 Hydrogen bonds: B:S.27, B:S.27, B:T.92, B:T.92, B:T.92, B:T.140, B:T.140 Salt bridges: B:R.24, B:R.75, B:R.75, B:R.97, B:H.164

2 x TRS: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL(Non-functional Binders)

TRS.2: 5 residues within 4Å: Chain A: D.105, K.223, D.227, N.274, D.275 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:K.223, A:D.227, A:D.227, A:D.275 Water bridges: A:D.227 TRS.4: 5 residues within 4Å: Chain B: D.105, K.223, D.227, N.274, D.275 5 PLIP interactions: 5 interactions with chain B Hydrogen bonds: B:D.105, B:K.223, B:D.275 Water bridges: B:D.227, B:D.275

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Hu, Y.L. et al., Crystal Structure of a Glutamate/Aspartate Binding Protein Complexed with a Glutamate Molecule: Structural Basis of Ligand Specificity at Atomic Resolution. J.Mol.Biol. (2008)

Release Date

2008-07-08

Peptides

PERIPLASMIC BINDING TRANSPORT PROTEIN: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

PERIPLASMIC BINDING TRANSPORT PROTEIN

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