SMTL ID : 2vhj.1

P4 PROTEIN FROM BACTERIOPHAGE PHI12 S252A MUTANT IN COMPLEX WITH ADP

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.80 Å

Oligo State

homo-hexamer

Ligands

6 x ADP: ADENOSINE-5'-DIPHOSPHATE(Non-covalent)

ADP.1: 13 residues within 4Å: Chain A: N.133, S.134, G.135, K.136, T.137, P.138, N.234, Y.288, S.292 Chain F: G.276, L.277, Q.278, R.279 19 PLIP interactions: 13 interactions with chain A, 6 interactions with chain F Hydrogen bonds: A:S.134, A:G.135, A:K.136, A:T.137, A:T.137, A:N.234, A:N.234, A:S.292, F:G.276, F:R.279 Water bridges: A:T.137, A:D.189, A:Y.288, F:R.272, F:R.272 pi-Stacking: A:Y.288, A:Y.288 Salt bridges: F:R.279, F:R.279 ADP.2: 13 residues within 4Å: Chain A: G.276, L.277, Q.278, R.279 Chain B: N.133, S.134, G.135, K.136, T.137, P.138, N.234, Y.288, S.292 23 PLIP interactions: 16 interactions with chain B, 7 interactions with chain A Hydrogen bonds: B:S.134, B:G.135, B:K.136, B:T.137, B:T.137, B:S.232, B:N.234, B:N.234, B:S.292, A:G.276 Water bridges: B:E.160, B:D.189, B:D.189, B:Y.288, B:Y.288, A:G.274, A:R.279, A:R.279, A:R.279 pi-Stacking: B:Y.288, B:Y.288 Salt bridges: A:R.279, A:R.279 ADP.3: 13 residues within 4Å: Chain B: G.276, L.277, Q.278, R.279 Chain C: N.133, S.134, G.135, K.136, T.137, P.138, N.234, Y.288, S.292 19 PLIP interactions: 6 interactions with chain B, 13 interactions with chain C Hydrogen bonds: B:G.276, B:R.279, C:S.134, C:G.135, C:K.136, C:T.137, C:T.137, C:N.234, C:N.234, C:S.292 Water bridges: B:R.272, B:R.279, C:T.137, C:D.189, C:Y.288 Salt bridges: B:R.279, B:R.279 pi-Stacking: C:Y.288, C:Y.288 ADP.4: 13 residues within 4Å: Chain C: G.276, L.277, Q.278, R.279 Chain D: N.133, S.134, G.135, K.136, T.137, P.138, N.234, Y.288, S.292 18 PLIP interactions: 12 interactions with chain D, 6 interactions with chain C Hydrogen bonds: D:S.134, D:G.135, D:K.136, D:T.137, D:T.137, D:N.234, D:N.234, D:S.292, C:G.276, C:R.279 Water bridges: D:T.137, D:D.189, C:R.272, C:R.272 pi-Stacking: D:Y.288, D:Y.288 Salt bridges: C:R.279, C:R.279 ADP.5: 13 residues within 4Å: Chain D: G.276, L.277, Q.278, R.279 Chain E: N.133, S.134, G.135, K.136, T.137, P.138, N.234, Y.288, S.292 21 PLIP interactions: 14 interactions with chain E, 7 interactions with chain D Hydrogen bonds: E:S.134, E:G.135, E:K.136, E:T.137, E:T.137, E:S.232, E:N.234, E:N.234, E:S.292, D:G.276 Water bridges: E:E.160, E:D.189, E:D.189, D:G.274, D:R.279, D:R.279, D:R.279 pi-Stacking: E:Y.288, E:Y.288 Salt bridges: D:R.279, D:R.279 ADP.6: 13 residues within 4Å: Chain E: G.276, L.277, Q.278, R.279 Chain F: N.133, S.134, G.135, K.136, T.137, P.138, N.234, Y.288, S.292 18 PLIP interactions: 12 interactions with chain F, 6 interactions with chain E Hydrogen bonds: F:S.134, F:G.135, F:K.136, F:T.137, F:T.137, F:N.234, F:N.234, F:S.292, E:G.276, E:R.279 Water bridges: F:T.137, F:D.189, E:R.272, E:R.279 pi-Stacking: F:Y.288, F:Y.288 Salt bridges: E:R.279, E:R.279

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Kainov, D.E. et al., Structural Basis of Mechanochemical Coupling in a Hexameric Molecular Motor. J.Biol.Chem. (2008)

Release Date

2007-12-04

Peptides

NTPASE P4: ABCDEF

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
A

E
B

F
C

NTPASE P4

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