SMTL ID : 2vht.1

P4 PROTEIN FROM BACTERIOPHAGE PHI12 R279A MUTANT IN COMPLEX WITH ATP

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 3.00 Å

Oligo State

homo-hexamer

Ligands

6 x ATP: ADENOSINE-5'-TRIPHOSPHATE(Non-covalent)

ATP.1: 12 residues within 4Å: Chain A: S.134, G.135, K.136, T.137, P.138, N.234, Y.288, S.292 Chain F: G.276, L.277, Q.278, N.318 13 PLIP interactions: 11 interactions with chain A, 2 interactions with chain F Hydrogen bonds: A:K.136, A:T.137, A:T.137, A:T.137, A:N.234, A:Y.288, A:S.292, A:S.292, F:G.276, F:I.316 Salt bridges: A:K.136 pi-Stacking: A:Y.288, A:Y.288 ATP.2: 12 residues within 4Å: Chain A: R.272, G.276, L.277, Q.278, N.318 Chain B: G.135, K.136, T.137, P.138, N.234, Y.288, S.292 11 PLIP interactions: 8 interactions with chain B, 3 interactions with chain A Hydrogen bonds: B:K.136, B:T.137, B:T.137, B:T.137, B:N.234, B:S.292, A:G.276, A:I.316 pi-Stacking: B:Y.288, B:Y.288 Salt bridges: A:R.272 ATP.3: 13 residues within 4Å: Chain B: R.272, G.276, L.277, Q.278, N.318 Chain C: G.135, K.136, T.137, P.138, E.160, N.234, Y.288, S.292 13 PLIP interactions: 4 interactions with chain B, 9 interactions with chain C Hydrogen bonds: B:G.276, B:Q.278, B:I.316, C:K.136, C:T.137, C:T.137, C:T.137, C:E.160, C:N.234, C:S.292 Salt bridges: B:R.272 pi-Stacking: C:Y.288, C:Y.288 ATP.4: 12 residues within 4Å: Chain C: G.276, L.277, Q.278, N.318 Chain D: S.134, G.135, K.136, T.137, P.138, N.234, Y.288, S.292 12 PLIP interactions: 10 interactions with chain D, 2 interactions with chain C Hydrogen bonds: D:K.136, D:T.137, D:T.137, D:T.137, D:N.234, D:S.292, D:S.292, C:G.276, C:I.316 Salt bridges: D:K.136 pi-Stacking: D:Y.288, D:Y.288 ATP.5: 12 residues within 4Å: Chain D: R.272, G.276, L.277, Q.278, N.318 Chain E: G.135, K.136, T.137, P.138, N.234, Y.288, S.292 11 PLIP interactions: 3 interactions with chain D, 8 interactions with chain E Hydrogen bonds: D:G.276, D:I.316, E:K.136, E:T.137, E:T.137, E:T.137, E:N.234, E:S.292 Salt bridges: D:R.272 pi-Stacking: E:Y.288, E:Y.288 ATP.6: 13 residues within 4Å: Chain E: R.272, G.276, L.277, Q.278, N.318 Chain F: G.135, K.136, T.137, P.138, E.160, N.234, Y.288, S.292 14 PLIP interactions: 10 interactions with chain F, 4 interactions with chain E Hydrogen bonds: F:K.136, F:T.137, F:T.137, F:T.137, F:E.160, F:N.234, F:Y.288, F:S.292, E:G.276, E:Q.278, E:I.316 pi-Stacking: F:Y.288, F:Y.288 Salt bridges: E:R.272

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Kainov, D.E. et al., Structural Basis of Mechanochemical Coupling in a Hexameric Molecular Motor. J.Biol.Chem. (2008)

Release Date

2007-12-04

Peptides

NTPASE P4: ABCDEF

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
A

E
B

F
C

NTPASE P4