SMTL ID : 2vj0.1

Crystal structure of the alpha-adaptin appendage domain, from the AP2 adaptor complex, in complex with an FXDNF peptide from amphiphysin1 and a WVXF peptide from synaptojanin P170

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.60 Å

Oligo State

hetero-1-1-mer

Ligands

1 x PHE- GLU- ASP- ASN- PHE- VAL- PRO: AMPHIPHYSIN(Non-covalent)

PHE-GLU-ASP-ASN-PHE-VAL-PRO.1: 11 residues within 4Å: Chain A: F.148, F.149, W.152, D.193, R.217, E.219, P.220, N.221, M.226, Y.227, R.228 21 PLIP interactions: 21 interactions with chain A Hydrophobic interactions: A:F.148, A:F.149, A:D.193, A:E.219, A:R.228 Hydrogen bonds: A:R.217, A:R.217, A:E.219, A:R.228 Water bridges: A:N.195, A:N.195, A:N.195, A:N.198, A:N.198, A:E.219, A:E.219, A:R.228, A:R.228 Salt bridges: A:R.228 pi-Stacking: A:W.152, A:W.152

1 x BEN: BENZAMIDINE(Non-functional Binders)

BEN.2: 3 residues within 4Å: Chain A: K.169, H.170, P.171 2 PLIP interactions: 2 interactions with chain A Hydrophobic interactions: A:P.171 Hydrogen bonds: A:H.170

1 x DTD: DITHIANE DIOL(Non-covalent)

DTD.3: 6 residues within 4Å: Chain A: E.41, F.42, R.43, L.46, G.47, R.48 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:R.48

3 x SO4: SULFATE ION(Non-functional Binders)

SO4.4: 6 residues within 4Å: Chain A: A.10, P.11, G.12, S.13, E.14, D.15 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:G.12, A:S.13, A:E.14, A:D.15 SO4.5: 4 residues within 4Å: Chain A: T.57, S.58, T.59, Y.119 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:S.58, A:T.59, A:T.59, A:T.59, A:Y.119 SO4.6: 3 residues within 4Å: Chain A: K.23, N.24, N.25 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:N.24, A:N.25 Water bridges: A:N.24, A:S.40

1 x CL: CHLORIDE ION(Non-functional Binders)

CL.7: 5 residues within 4Å: Chain A: L.74, N.77, F.107, T.108, E.109 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Olesen, L.E. et al., Solitary and Repetitive Binding Motifs for the Ap2 Complex {Alpha}-Appendage in Amphiphysin and Other Accessory Proteins. J.Biol.Chem. (2008)

Release Date

2007-12-25

Peptides

AP-2 COMPLEX SUBUNIT ALPHA-2: A
SYNAPTOJANIN-1: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
P

AP-2 COMPLEX SUBUNIT ALPHA-2

SYNAPTOJANIN-1

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